View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0807_low_10 (Length: 347)

Name: NF0807_low_10
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0807_low_10
NF0807_low_10
[»] chr3 (7 HSPs)
chr3 (87-279)||(14856837-14857038)
chr3 (118-268)||(19967195-19967353)
chr3 (118-272)||(20020925-20021087)
chr3 (118-180)||(19962601-19962663)
chr3 (118-180)||(20027740-20027802)
chr3 (185-257)||(19962507-19962579)
chr3 (185-257)||(20027824-20027896)
[»] chr6 (1 HSPs)
chr6 (83-116)||(266388-266421)
[»] chr4 (2 HSPs)
chr4 (87-120)||(35615451-35615484)
chr4 (83-115)||(44356676-44356708)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 14856837 - 14857038
Alignment:
Q  87 gaaagttagggg-ttaaaactgctattaagtcttccagttttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccatt----- 180  Q
    |||||||||||| ||| ||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  14856837 gaaagttagggggttataactgctattaaaccttccaattttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccattcttct 14856936  T
Q  181 ---ggagttctccacccattgtacttcacttctaatgacaaatttgtggtggtttgagaggaaatagagaaatggggtggaagagaataagtgtcgtctc 277  Q
       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14856937 tgtggagttctccacccattgtacttcacttctaatggcaaatttgtggtggtttgagaggaaatagagaaatggggtgtaagagaataagtgtcgtctc 14857036  T
Q  278 tg 279  Q
    ||    
T  14857037 tg 14857038  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 118 - 268
Target Start/End: Complemental strand, 19967353 - 19967195
Alignment:
Q  118 ttccagttttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccatt--------ggagttctccacccattgtacttcacttc 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||        ||  |||||||||||||||||||||||||    
T  19967353 ttccagttttgatccataaaaattcaaactttggtcgtaatttgttgacccatttcttccattcatcttgcggccttctccacccattgtacttcacttc 19967254  T
Q  210 taatgacaaatttgtggtggtttgagaggaaatagagaaatggggtggaagagaataag 268  Q
    || || ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19967253 tagtggcaaatttgtggtggtttgaaaggaaatagagaaatggggtggaagagaataag 19967195  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 118 - 272
Target Start/End: Original strand, 20020925 - 20021087
Alignment:
Q  118 ttccagttttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccatt--------ggagttctccacccattgtacttcacttc 209  Q
    |||||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||||||        |||| |||||||||||  ||||| |||||    
T  20020925 ttccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttccattcttcttgtggagctctccacccataatacttaacttc 20021024  T
Q  210 taatgacaaatttgtggtggtttgagaggaaatagagaaatggggtggaagagaataagtgtc 272  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20021025 taatggcaaatttgtggtggtttgagaggaaatagagaaatggggtggaagagaatcagtgtc 20021087  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 19962663 - 19962601
Alignment:
Q  118 ttccagttttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccatt 180  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||    
T  19962663 ttccagttttgatccataaagattcaaactttggttgtaattttgtgacccagttgttccatt 19962601  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 20027740 - 20027802
Alignment:
Q  118 ttccagttttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccatt 180  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||    
T  20027740 ttccagttttgatccataaagattcaaactttggttgtaattttgtgacccagttgttccatt 20027802  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 19962579 - 19962507
Alignment:
Q  185 ttctccacccattgtacttcacttctaatgacaaatttgtggtggtttgagaggaaatagagaaatggggtgg 257  Q
    ||||||| ||| ||||||| |||| ||||| | |||||||||||||||||||||||||||||||| |||||||    
T  19962579 ttctccatccactgtactttacttgtaatggcgaatttgtggtggtttgagaggaaatagagaaaaggggtgg 19962507  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 20027824 - 20027896
Alignment:
Q  185 ttctccacccattgtacttcacttctaatgacaaatttgtggtggtttgagaggaaatagagaaatggggtgg 257  Q
    ||||||| ||||||||||| |||| ||||| | |||| ||||||||||||||| ||||||||||| |||||||    
T  20027824 ttctccatccattgtactttacttgtaatggcgaattggtggtggtttgagagaaaatagagaaaaggggtgg 20027896  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 266388 - 266421
Alignment:
Q  83 ttgagaaagttaggggttaaaactgctattaagt 116  Q
    ||||||||||||||||||||||||| ||||||||    
T  266388 ttgagaaagttaggggttaaaactgatattaagt 266421  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 35615451 - 35615484
Alignment:
Q  87 gaaagttaggggttaaaactgctattaagtcttc 120  Q
    ||||||||||||| ||||||||||||||||||||    
T  35615451 gaaagttaggggtgaaaactgctattaagtcttc 35615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 44356676 - 44356708
Alignment:
Q  83 ttgagaaagttaggggttaaaactgctattaag 115  Q
    |||||||||||||||| ||||||||||||||||    
T  44356676 ttgagaaagttaggggctaaaactgctattaag 44356708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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