View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0807_low_14 (Length: 317)

Name: NF0807_low_14
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0807_low_14
NF0807_low_14
[»] chr8 (2 HSPs)
chr8 (32-158)||(31606901-31607027)
chr8 (253-307)||(31606813-31606867)
[»] chr3 (1 HSPs)
chr3 (6-38)||(48767489-48767521)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 31607027 - 31606901
Alignment:
Q  32 tccaacccatccataagaaccctgcacctccaagcatgtgaattatgttatttggtggaaaattttgtctatcatttgaagttcttggaccaacctgcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31607027 tccaacccatccataagaaccctgcacctccaagcatgtgaattatgttatttggtggaaaattttgtctatcatttgaagttcttggaccaacctgcca 31606928  T
Q  132 ttcatcaacattaatcagaagtttaat 158  Q
    |||||||||||||||||||||||||||    
T  31606927 ttcatcaacattaatcagaagtttaat 31606901  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 31606867 - 31606813
Alignment:
Q  253 gcaaaattttacttgaatttgtaaagttttgaaataaaccataattttagtataa 307  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31606867 gcaaaattttacttgagcttgtaaagttttgaaataaaccataattttagtataa 31606813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 48767521 - 48767489
Alignment:
Q  6 accatggcacttcttctcatagtagctccaacc 38  Q
    |||| ||||||||||||||||||||||||||||    
T  48767521 accaaggcacttcttctcatagtagctccaacc 48767489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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