View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0807_low_20 (Length: 251)
Name: NF0807_low_20
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0807_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 780764 - 781006
Alignment:
| Q |
9 |
agcagagacaaaccgggggatgtttttataatttcaatacatttagggactgtaatgacaccgccccgtatatttagggaccaaaataacgattactcag |
108 |
Q |
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| T |
780764 |
agcagagacaaaccgggggatgtttttataatttcaatacatttagggactgtaatgacaccgccccgtatatttagggaccaaaataacgattactcag |
780863 |
T |
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| Q |
109 |
ctaaaaacacgcagtttagtaatttgtaggactgaaaatcgagtaaaggtactaaaaaccaaattcaaatgattacatggactagacacatacttaaccc |
208 |
Q |
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| T |
780864 |
ctaaaaacacgcagtttagtaatttgtaggactgaaaatcgagtaaaggtactaaaaaccaaattcaaatgattacatggactagacacatatttaaccc |
780963 |
T |
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| Q |
209 |
taagaaaatgtccttgttacatatatggcgtcattcgatacat |
251 |
Q |
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| T |
780964 |
taagaaaatgtccttgttacatatatggcgtcattcgatacat |
781006 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 3496403 - 3496444
Alignment:
| Q |
27 |
gatgtttttataatttcaatacatttagggactgtaatgaca |
68 |
Q |
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| T |
3496403 |
gatgtttttataatttcaatacatttagagactatagtgaca |
3496444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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