View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0807_low_6 (Length: 443)

Name: NF0807_low_6
Description: NF0807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0807_low_6
NF0807_low_6
[»] chr2 (6 HSPs)
chr2 (79-335)||(1233529-1233770)
chr2 (30-74)||(1233452-1233496)
chr2 (381-435)||(1233816-1233870)
chr2 (278-334)||(35029861-35029917)
chr2 (278-334)||(34229074-34229130)
chr2 (278-334)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (278-335)||(40809592-40809649)
chr3 (278-335)||(40810284-40810341)
chr3 (278-334)||(35903702-35903758)
chr3 (278-335)||(8922897-8922954)
chr3 (278-335)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (279-334)||(44516799-44516854)
chr4 (278-334)||(32159521-32159577)
chr4 (278-334)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (278-327)||(8814483-8814532)
chr8 (272-329)||(17943018-17943075)
chr8 (278-335)||(42578722-42578779)
chr8 (282-334)||(11519367-11519419)
chr8 (278-334)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (289-329)||(34260140-34260180)
chr6 (289-329)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (293-329)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (278-334)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 79 - 335
Target Start/End: Original strand, 1233529 - 1233770
Alignment:
Q  79 aagcatgatggtcttggtactgttgatgggtttggcaacccatggaattaagataagggaaactaactctacctaaaggtggaaaataagagttcaattt 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||               ||||||||||| |||||||||||||||||||||    
T  1233529 aagcatgatggtcttggtactgttgatgggtttggca-cccatggaaccaag---------------tctacctaaagatggaaaataagagttcaattt 1233612  T
Q  179 gatatagttggtgaatacctttagtatttcaattacnnnnnnnn-ggtacaatttacctatcacattttaatcccccctccaatttaccggtctattttt 277  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1233613 gatatagttggtgaatacctttagtatttcaattactttttttttggtacaatttacctatcacattttaatcccccctccaatttaccagtctattttt 1233712  T
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggc 1233770  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 1233452 - 1233496
Alignment:
Q  30 cattataggctttttactctctcttccaaaattagcaacttattc 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1233452 cattataggctttttactctctcttccaaaattagcaacttattc 1233496  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 1233816 - 1233870
Alignment:
Q  381 ctagttcttctcttgtatctgaaacaacacaccagtctcctttcttcttcatctc 435  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||    
T  1233816 ctagttcttctcttgtatccgaagcaacacaccagtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 35029917 - 35029861
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  35029917 ctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 34229130 - 34229074
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    ||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  34229130 ctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 34228160 - 34228216
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    ||||||||| | |||||||||||||| ||||| |||| || ||||||||||| ||||    
T  34228160 ctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 40809592 - 40809649
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40809592 ctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggc 40809649  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 40810341 - 40810284
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  40810341 ctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggc 40810284  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 35903702 - 35903758
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    |||||||||||||  ||||||||||| ||||| |||| |||||||||||||| ||||    
T  35903702 ctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 8922897 - 8922954
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  8922897 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 8922954  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 41325835 - 41325892
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  41325835 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 41325892  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 44516799 - 44516854
Alignment:
Q  279 tccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||    
T  44516799 tccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtgg 44516854  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 32159577 - 32159521
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    |||||||||||||||||||||||||| ||||| |   | ||||||||||||| ||||    
T  32159577 ctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 39311427 - 39311371
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    ||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||    
T  39311427 ctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtgg 39311371  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 8814532 - 8814483
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtga 327  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  8814532 ctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 17943075 - 17943018
Alignment:
Q  272 atttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgaca 329  Q
    ||||| ||||||||   ||| ||||||||||| ||||||||| |||||||||||||||    
T  17943075 attttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgaca 17943018  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 42578722 - 42578779
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 335  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| ||||| ||||| |||||    
T  42578722 ctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggc 42578779  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 11519367 - 11519419
Alignment:
Q  282 atttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    ||||||||||| |||||||||| ||||| || |||| ||||||||||| ||||    
T  11519367 atttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtgg 11519419  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 38444520 - 38444464
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    |||||||||| |||||||||||||||  |||| |||| || ||||||||||| ||||    
T  38444520 ctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtgg 38444464  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 34260140 - 34260180
Alignment:
Q  289 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 329  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34260140 tttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 34262230 - 34262190
Alignment:
Q  289 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 329  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34262230 tttcctcaatttaccccattttaagttatggatgtgtgaca 34262190  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 10884 - 10920
Alignment:
Q  293 ctcaatttacctcatttgaagtcatggatgtgtgaca 329  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10884 ctcaatttaccccatttgaagacatggatgtgtgaca 10920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 7338854 - 7338798
Alignment:
Q  278 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 334  Q
    ||||||||| |||||||||||||||  ||||| ||||||| ||||||| ||| ||||    
T  7338854 ctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtgg 7338798  T

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