View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0808_high_10 (Length: 450)
Name: NF0808_high_10
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 2 - 439
Target Start/End: Complemental strand, 931398 - 930961
Alignment:
| Q |
2 |
catcaaagctttgccagaatttttgcactcagtgatattaacttctacatccttatctcccttacacagaggagtttgttcaattgacatcatttcccgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
931398 |
catcaaagctttgccagaatttttgcactcagtgatattaacttctacatccttatctcccttacacagaggagtttgttcaattgacatcatttcccgg |
931299 |
T |
|
| Q |
102 |
acacaatcatcagcctcaccgttttccataggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggctctttatctccaagt |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
931298 |
gcacaatcatcagcctcaccgttttccctaggctcaagaacatttagttccgaaaatgcaggggcgtttatattctccaattggctctttatctccaagt |
931199 |
T |
|
| Q |
202 |
caggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtcacaggttgacgaaag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
931198 |
caggggacattttcacaaatcatgcaaaccttcactgctcagaaatcatgcaaaaaccacaatatcatcatgaaaaacatgagtcacaggttgaccaaag |
931099 |
T |
|
| Q |
302 |
nnnnnnntagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaannnnnnnactattataaaggaaaatacataactaaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
931098 |
aaaaaaatagatgcataataaaccaagactacagaacaaattgcaaaacgtcaccttgatccaatctttttactattataaaggaaaatacataactaaa |
930999 |
T |
|
| Q |
402 |
actactacattcttcataataatggtaaacacattcat |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
930998 |
actactacattcttcataataatggtaaacacattcat |
930961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 180 times since January 2019
Visitors: 5832