View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0808_high_12 (Length: 407)
Name: NF0808_high_12
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 407
Target Start/End: Original strand, 47193898 - 47194283
Alignment:
| Q |
22 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47193898 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
47193997 |
T |
|
| Q |
122 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggagat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47193998 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggagat |
47194097 |
T |
|
| Q |
222 |
gcttcttcagtcccatgaaaaaagaggcacccctcgttagttctttttcctttattgttccacaaaatgcttgaataacgtgcttgttctaataaattgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47194098 |
gcttcttcagtcccatgaaaaaagaggcacccctcgttagttctttttcctttattgttccacaaaatgcttgaataacgtgcttgttctaataaattgt |
47194197 |
T |
|
| Q |
322 |
attccttagcnnnnnnnnnnnnnnnnnnnnntgtatagttaatagtttacactatcttttctagtgaatatacatgagataactag |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47194198 |
attccttagcaaaataaaataaaaaataaattgtatagttaatagtttacactatcttttctagtgaatatacatgagataactag |
47194283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 307 times since January 2019
Visitors: 5834