View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_high_27 (Length: 295)
Name: NF0808_high_27
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 52791709 - 52791851
Alignment:
| Q |
85 |
tgactgagattataagctgcaaattataatcattcaaaagccaatgtattctagctgaagttgtttatcttcctatgaagtaaagtcattctcaatgttg |
184 |
Q |
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| T |
52791709 |
tgactgagattataagctgcaaattataatcattcaaaagccaatgtattctaggtgaagttgtttatcttcctatgaagtaaagtcattctcaatgttg |
52791808 |
T |
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| Q |
185 |
aaagccttgcgaatctcctccagcgtcttacccttgatgatgt |
227 |
Q |
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| T |
52791809 |
aaagccttgcaaatctcctccggcgtcttacccttgatcatgt |
52791851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52791653 - 52791711
Alignment:
| Q |
1 |
cataacaatctaccaaagaaaaaacgaaacataacataaatattgcaaccctcccatga |
59 |
Q |
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| T |
52791653 |
cataacaatctaccaaagaaaaaacgaaacataacataaatattgcaaccctcccatga |
52791711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 11160902 - 11160852
Alignment:
| Q |
178 |
aatgttgaaagccttgcgaatctcctccagcgtcttacccttgatgatgtc |
228 |
Q |
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| T |
11160902 |
aatgttgaaagtcttacgaatctcctccggcgtcctacccttgatcatgtc |
11160852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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