View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_high_36 (Length: 272)
Name: NF0808_high_36
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 45830474 - 45830295
Alignment:
| Q |
1 |
gtaatttgtaggatttagaattagccaacttctcatgatttttt--caaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaa |
98 |
Q |
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| T |
45830474 |
gtaatttgtaggatttagaattagccaaattctcatgattttttttcaaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaa |
45830375 |
T |
|
| Q |
99 |
atctaatgatactaagtaattaagcatctcaacacagttcagagccatgaatattggagttaagacagagcacagatata |
178 |
Q |
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| T |
45830374 |
atttaatgatactaagtaattaagcatctcaacatagttcagagccatgaatattggagttaagacagagcacatatata |
45830295 |
T |
|
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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 48621724 - 48621873
Alignment:
| Q |
5 |
tttgtaggatttagaattagccaacttctcatgatttt--ttcaaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaaatct |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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| T |
48621724 |
tttgtaggatttagaattagccaacttctcaggattttttttcaaagcacatggttcaggcatgaaattagctacttcagtgaaattt------------ |
48621811 |
T |
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| Q |
103 |
aatgatactaagtaattaagcatctcaacacagttcagagccatgaatattggagttaagacagagcac |
171 |
Q |
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| T |
48621812 |
-------ctaagtaattaagcatctcaacacagttcagagccatgaatattggagttaagacagagcac |
48621873 |
T |
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