View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0808_high_37 (Length: 269)
Name: NF0808_high_37
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 18313795 - 18313877
Alignment:
| Q |
84 |
taaacaaaatgttatagtgtgtttaatgcattggttaaataaacgaatatagaaatatgatgttagaaaagtggtaaatccaa |
166 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
18313795 |
taaataaaatgttatagtgtgtttaatgcattggttaaataaacaaatatagaaatattatgttagaaaagtggtatatccaa |
18313877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 18313912 - 18313976
Alignment:
| Q |
178 |
aaaattattgttcaacttaaatttatataaaaactgttgtgtagatagattagctaatcatcatg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
18313912 |
aaaattattgttcaacttaaatttatataaaaattgttgtgtagatatattatctaatcatcatg |
18313976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 18313754 - 18313799
Alignment:
| Q |
2 |
ttgtgttatattagtgcaatattttcttaaaaaatatgatgtaaat |
47 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
18313754 |
ttgtgttatgataatgcaatattttcttaaaaaatatgatgtaaat |
18313799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1145 times since January 2019
Visitors: 5827