View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_high_50 (Length: 205)
Name: NF0808_high_50
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 42604302 - 42604118
Alignment:
| Q |
18 |
caaacttttgaaattgattgtttcggtgtgatattcaatctgtttctcttctttctcttagtttttaaaatataaatagaaatggcattatgaaaggata |
117 |
Q |
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| T |
42604302 |
caaacttttgaaattgattgtttcagtgtgatattcaatctatttctcttctttctcttagtttttaaaatataaatagaaatgccattatgaaaggata |
42604203 |
T |
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| Q |
118 |
gatggcaaggttggtggggctgaaaggcaaatacggatagatcgtttttaatgccaaaaattcaagattttgctttcttctttct |
202 |
Q |
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| T |
42604202 |
gatggcaaggttggtggggctgaaagacaaatacggatagatcgtttttaatgccaaaaattcaagattttgctttcttctttct |
42604118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 49043630 - 49043818
Alignment:
| Q |
18 |
caaacttttgaaattgattgtttcggtgtgatattcaatctgttt--ctcttctttctcttagtttttaaaatataaatagaaatggcattatgaaagga |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
49043630 |
caaacttttgaaattgattgtttcagtgtgatattcaatctgttttactcttctttctcttggcttttaaaatataaatagaaatggcattatgaaagga |
49043729 |
T |
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| Q |
116 |
tagatggcaaggttggtggggctgaaaggcaaatacggatagatcgtttttaatgccaaaaa---ttcaagattttgctttcttctttct |
202 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49043730 |
tagatggcaaggttggtggggctgaaagacaaatacggatagatcg-ttttaatgccaaaaattcttcaagattttgctttcttctttct |
49043818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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