View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_high_8 (Length: 461)
Name: NF0808_high_8
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 41 - 432
Target Start/End: Complemental strand, 13940316 - 13939914
Alignment:
| Q |
41 |
agcagagacggatgtactccttgtggattgggggcaactgcctaaatcnnnnnnn----aactaattaggcttaatcttatattatgcaaacatttcttt |
136 |
Q |
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| T |
13940316 |
agcagagacggatgtactccttgtggattgggggcaactgcctaaatctatttttttttaactaattaggcttaatcttatattatgcaaacatttcttt |
13940217 |
T |
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| Q |
137 |
cttgtgggatattataagtttaaagaagacacacaatatgacccttgatgaattaagaggactacgagtgtaccaatgacaaagtaattatattctagaa |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13940216 |
cttgtgggatattataagtttaaagaagactcacaatatgacccttgatgaattaagaggactaggagtgtaccaatgacaaagtaattatattctagaa |
13940117 |
T |
|
| Q |
237 |
gaaatttcttgtgaaaaggtt-aacttcatgtgggtaaccccttacttttaaagattagtgttaacaagagaactgcattagtaaacacatgatgactat |
335 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
13940116 |
gaaatttcttgtgaaaaggttcaacttcatgtgggtaaccccttgcttttaaagattagtgttaacaagagacctgcattagtaaacacatgatggctat |
13940017 |
T |
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| Q |
336 |
ttcttcatccatgttttcagaaatttaattcgcaatcattttgttgtgatatattgtatttt------tgctacttgttgaactcatgacatctttacag |
429 |
Q |
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| T |
13940016 |
ttcttcatccatgttttcagaaatttgattagcaatcattttgttgtgatatattgtattgttgctaatgctacttgttgaactcgtgacatctttacag |
13939917 |
T |
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| Q |
430 |
gtc |
432 |
Q |
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||| |
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| T |
13939916 |
gtc |
13939914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 222 - 432
Target Start/End: Original strand, 4048161 - 4048376
Alignment:
| Q |
222 |
aattatattctagaagaaatttcttgtgaaaaggtt-aacttcatgtgggtaaccccttacttttaaagattagtgttaacaagagaactgcattagtaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4048161 |
aattatattctagaagaaatttcttgtgaaaaggtttaacttcatgtgggtaaccccttgcttttaaagattagtgttaacaagagaactgcattagtaa |
4048260 |
T |
|
| Q |
321 |
acacatgatgactatttcttcatcc----atgttttcagaaatttaattcgcaatcattttgttgtgatatattgtatttttgctacttgttgaactcat |
416 |
Q |
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| T |
4048261 |
acacatgatggctatttcttcatccatatatgttttcagaaatttaattcgcaatcattttgttgtgatatattgtattgttgctacttgttgaactcat |
4048360 |
T |
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| Q |
417 |
gacatctttacaggtc |
432 |
Q |
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| T |
4048361 |
gacatctttacaggtc |
4048376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 4047885 - 4048075
Alignment:
| Q |
41 |
agcagagacggatgtactccttgtggattgggggcaactgcctaaatcnnnnnnnaactaattaggcttaatcttatattatgcaaacatttctttcttg |
140 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4047885 |
agcagagacggatgtaatccttgtggattgggggcaactgcctaagtctttttataactaattaggcttaatcttatattatgcaaacatttctttcttg |
4047984 |
T |
|
| Q |
141 |
tgggatattataagtttaaagaagacacacaatatgacccttgatgaattaagaggactacg-----agtgtaccaatgacaaagtaatta |
226 |
Q |
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| T |
4047985 |
ttggatattataagtttaaagaagacacacaatatgacccttgatgaattaagaggactaggagtgtagtgtaccaatgacaaagtaatta |
4048075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 4086840 - 4086929
Alignment:
| Q |
110 |
aatcttatattatgcaaacatttctttcttgtgggatatta-taagtttaaagaagacacacaatatgacccttgatgaattaagaggac |
198 |
Q |
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||||||||| |||| | ||||| |||||||||| |||||| |||||||||||||||||||| || ||||| | || |||||||||||| |
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| T |
4086840 |
aatcttatagtatgaacacattcctttcttgtgatatattaataagtttaaagaagacacaccatttgaccttggacaaattaagaggac |
4086929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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