View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_high_9 (Length: 456)
Name: NF0808_high_9
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 79 - 441
Target Start/End: Complemental strand, 4632204 - 4631842
Alignment:
| Q |
79 |
acaagttctgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataaga |
178 |
Q |
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| T |
4632204 |
acaagttctgatgctagagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgataaga |
4632105 |
T |
|
| Q |
179 |
gtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4632104 |
gtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccaggtttgtttc |
4632005 |
T |
|
| Q |
279 |
ttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttgga |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632004 |
ttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattttgga |
4631905 |
T |
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| Q |
379 |
aatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaag |
441 |
Q |
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| T |
4631904 |
aatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaag |
4631842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 87 - 346
Target Start/End: Complemental strand, 48250458 - 48250199
Alignment:
| Q |
87 |
tgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatg |
186 |
Q |
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|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48250458 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
48250359 |
T |
|
| Q |
187 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaaca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||| |||| |
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| T |
48250358 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaaca |
48250259 |
T |
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| Q |
287 |
agcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
346 |
Q |
| |
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| T |
48250258 |
aacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
48250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 438
Target Start/End: Complemental strand, 12075215 - 12075142
Alignment:
| Q |
364 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaac |
438 |
Q |
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||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| ||||||||||| |
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| T |
12075215 |
tcagatcgttttggaaatgtaatttta-aatccttcaaacgcaagtactttagaatctttgtactctaagttaac |
12075142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 29737498 - 29737555
Alignment:
| Q |
364 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatct |
421 |
Q |
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|||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |
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| T |
29737498 |
tcaggtcattttggaaatgtaattttataatccataatgcacgagtactttaaaatct |
29737555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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