View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_1 (Length: 971)
Name: NF0808_low_1
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 746; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 69 - 883
Target Start/End: Complemental strand, 31550250 - 31549436
Alignment:
| Q |
69 |
agcagagaagtcggtaagaaatattttgaagtcttttttgccttttaaattttggnnnnnnnnnnntgaaagcaaatgtcaatcataataagctatgaaa |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
31550250 |
agcagagaagtcggtaagaaatattttgaagtcttttttgccttttaaattttggaaaaaaaaaaatgaaaggaaatgtcaatcataataagctttgaaa |
31550151 |
T |
|
| Q |
169 |
atatctttgtaaacacaaggctgcagtggaatctctttctaaagagagagaagcaaggctggatattgagaggtcacatactactctttccgaggacctc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31550150 |
atatctttgtaaacacaaggctgcagtggaatctctttctaaagagagagaagcaaggctggatattgagaggtcacatactactctttccgaggacctc |
31550051 |
T |
|
| Q |
269 |
ggaaaagctgaacgagagattcaaagtgcaaatcagaaggtaaaataacagtataattctagttcaatgaactcctttccaccnnnnnnnncttcttcca |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31550050 |
ggaaaagctgaacgagagattcaaagtgcaaatcagaaggtaaaataacagtataattctagttcaatgaactcctttccaccttttttttcttcttcca |
31549951 |
T |
|
| Q |
369 |
atcattgcaggaattaaactaatattaattattgtcttcattgatggatttctgcagatatcctcgctcaatgaaatgtataagcggttacaagaataca |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549950 |
atcattgcaggaattaaactaatattaattattgtcttcattgatggatttctgcagatatcctcgctcaatgaaatgtataagcggttacaagaataca |
31549851 |
T |
|
| Q |
469 |
taacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagatgaactcaaacgtgtagagaaagagaaggctactgcagagga |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549850 |
taacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagatgaactcaaacgtgtagagaaagagaaggctactgcagagga |
31549751 |
T |
|
| Q |
569 |
gaacatcgccatgctaaagggtcaacttactttatccattgtaagttctgctttcacatgtgattcttttcaactggaattcaagttagaataggctaag |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549750 |
gaacatcgccatgctaaagggtcaacttactttatccattgtaagttctgctttcacatgtgattcttttcaactggaattcaagttagaataggctaag |
31549651 |
T |
|
| Q |
669 |
atttactcattctttatcttcttctgcgaatgtttagacgaagataatgttaactacgttgaatatgatatactttgaagatgattcaaattgtatataa |
768 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549650 |
atttactcattctttatcttcttctgcgaatgtttagacgaagataatgttaactacgttgaatatgatatactttgaagatgattcaaattgtatataa |
31549551 |
T |
|
| Q |
769 |
tattttgttcaatacaatttcttgtgacctaagttattgaactcggttcatttaatagtcttctcaagaagaggccacaaagcagaaagatgatcttgct |
868 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549550 |
tattttgttcaatacaatttcttgtgacctaagttattgaacttggttcatttaatagtcttctcaagaagaggccacaaagcagaaagatgatcttgct |
31549451 |
T |
|
| Q |
869 |
agtgaagtttattct |
883 |
Q |
| |
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||||||||||||||| |
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|
| T |
31549450 |
agtgaagtttattct |
31549436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 435 - 553
Target Start/End: Original strand, 34649503 - 34649621
Alignment:
| Q |
435 |
ctcaatgaaatgtataagcggttacaagaatacataacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagatgaactca |
534 |
Q |
| |
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|||||||| ||||||||||| |||||||| || |||||||| || || ||||||||||||||||||||| |||| ||||| |||| |||| ||| |||| |
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| T |
34649503 |
ctcaatgacatgtataagcgattacaagagtatataacaagcttgcagcagtacaatggaaaacttcattctgaactttctacagtggaaggtgatctca |
34649602 |
T |
|
| Q |
535 |
aacgtgtagagaaagagaa |
553 |
Q |
| |
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| ||||||||||||||||| |
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| T |
34649603 |
agcgtgtagagaaagagaa |
34649621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 34649159 - 34649305
Alignment:
| Q |
170 |
tatctttgtaaacacaaggctgcagtggaatctctttctaaagagagagaagcaaggctggatattgagaggtcacatactactctttccgaggacctcg |
269 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||| |||||| ||||| || ||||| || |||| ||||| || || || || || || || |||| |
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| T |
34649159 |
tatcttttgaaacacaaggctgcaatggaatctcttattaaagaaagagaggctaggcttgactttgaaaggtcgcagacaacactatcagaagatctcg |
34649258 |
T |
|
| Q |
270 |
gaaaagctgaacgagagattcaaagtgcaaatcagaaggtaaaataa |
316 |
Q |
| |
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| | |||| |||| ||| || ||| |||||||||||||||| ||||| |
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| T |
34649259 |
gtagagctcaacgtgagcttgaaactgcaaatcagaaggtataataa |
34649305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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