View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_10 (Length: 523)

Name: NF0808_low_10
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_10
NF0808_low_10
[»] chr1 (9 HSPs)
chr1 (9-425)||(6521980-6522394)
chr1 (240-429)||(6516870-6517059)
chr1 (244-428)||(6512475-6512659)
chr1 (244-429)||(6506562-6506753)
chr1 (138-201)||(6506438-6506501)
chr1 (264-338)||(47778382-47778456)
chr1 (264-418)||(47788424-47788578)
chr1 (378-418)||(47759914-47759954)
chr1 (378-418)||(47712999-47713039)
[»] scaffold0341 (4 HSPs)
scaffold0341 (244-429)||(587-778)
scaffold0341 (244-429)||(8240-8431)
scaffold0341 (138-201)||(463-526)
scaffold0341 (138-201)||(8116-8179)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 6522394 - 6521980
Alignment:
Q  9 caacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacacatagtgagacattaaatatttaatatatcaaaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  6522394 caacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacaca--gtgagacattaaatatttaatatatcaaaga 6522297  T
Q  109 tatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522296 tatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacagg 6522197  T
Q  209 caccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522196 caccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacct 6522097  T
Q  309 aacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522096 aacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccat 6521997  T
Q  409 atatggtttggttatta 425  Q
    |||||||||||||||||    
T  6521996 atatggtttggttatta 6521980  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 240 - 429
Target Start/End: Original strand, 6516870 - 6517059
Alignment:
Q  240 gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt 339  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||  | ||| |||||||||||  |||  ||||| |    
T  6516870 gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat 6516969  T
Q  340 tgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 429  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  6516970 tgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttg 6517059  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 244 - 428
Target Start/End: Original strand, 6512475 - 6512659
Alignment:
Q  244 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat 343  Q
    |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||  |||  ||| |||||||    
T  6512475 gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat 6512574  T
Q  344 agattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattattt 428  Q
    |||||  |||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  6512575 agattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattattt 6512659  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 244 - 429
Target Start/End: Original strand, 6506562 - 6506753
Alignment:
Q  244 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 337  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  6506562 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 6506661  T
Q  338 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 429  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  6506662 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 6506753  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 6506438 - 6506501
Alignment:
Q  138 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 201  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  6506438 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 6506501  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
Q  264 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct 338  Q
    |||||| | ||||||||||| || |||||||||||||||||||| | |||||| ||||||||  |||||||||||    
T  47778456 gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct 47778382  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 418
Target Start/End: Complemental strand, 47788578 - 47788424
Alignment:
Q  264 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcat 363  Q
    |||||| | ||||||||||| || ||||||| |||||||||||| | ||||||| |||||||  |||||| |||    || ||||||| |||||||||||    
T  47788578 gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaacaatcat 47788479  T
Q  364 cacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 418  Q
    ||||   ||    |||||| ||||| || || ||||||||||||||||| |||||    
T  47788478 cacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttg 47788424  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 47759914 - 47759954
Alignment:
Q  378 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 418  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttg 47759954  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 47712999 - 47713039
Alignment:
Q  378 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 418  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  47712999 gacaaatcaggtgtacactgcacaagaccatatatggtttg 47713039  T

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Target: scaffold0341 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 244 - 429
Target Start/End: Original strand, 587 - 778
Alignment:
Q  244 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 337  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  587 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 686  T
Q  338 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 429  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  687 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 778  T

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Target: scaffold0341; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 244 - 429
Target Start/End: Original strand, 8240 - 8431
Alignment:
Q  244 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 337  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  8240 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 8339  T
Q  338 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 429  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  8340 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 8431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 463 - 526
Alignment:
Q  138 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 201  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  463 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 8116 - 8179
Alignment:
Q  138 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 201  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  8116 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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