View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_17 (Length: 426)
Name: NF0808_low_17
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 34292808 - 34292490
Alignment:
| Q |
16 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292808 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34292709 |
T |
|
| Q |
116 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatg |
215 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34292708 |
cacctaatatgcaaaaatgggtctatgatgtgacaacaattgaagatcagttgcaaaagtggctctctgatgaaaatagagttaaaaatagcaaaaaatg |
34292609 |
T |
|
| Q |
216 |
ctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaa |
315 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34292608 |
ctttggttgacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagg-aagaagaaaa |
34292510 |
T |
|
| Q |
316 |
caaatttcaagttatttcat |
335 |
Q |
| |
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|||||||||||||||||||| |
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| T |
34292509 |
caaatttcaagttatttcat |
34292490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 34567319 - 34567147
Alignment:
| Q |
16 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567319 |
atcacaacaaatttggaggaagaacttgagaggttgaaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattg |
34567220 |
T |
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| Q |
116 |
cacctaatgtgcaaaaatggctctatgaagtgacaacaattgaagatcagttgcaaaagtggctctctgatga |
188 |
Q |
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| T |
34567219 |
cacctaatgtgcaaaaatggctctatgatgtcacaacaattgaaaatgagttgcaaaagtggctctctgatga |
34567147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 34567148 - 34567038
Alignment:
| Q |
224 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaacaaatttc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34567148 |
gacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagg-aagaagaaaacaaatttc |
34567050 |
T |
|
| Q |
324 |
aagttatttcat |
335 |
Q |
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|||||||||||| |
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| T |
34567049 |
aagttatttcat |
34567038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 34555494 - 34555400
Alignment:
| Q |
211 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaagga |
305 |
Q |
| |
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||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| ||||| |||||| ||| ||||||| |
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| T |
34555494 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgaatatattataaggttgaagga |
34555400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 52 - 322
Target Start/End: Complemental strand, 15896996 - 15896727
Alignment:
| Q |
52 |
aaaatgataaaacaagcattgcaaacaagggttgaaactgaaagaaggaaaggatatgaaattgcacctaatgtgcaaaaatggctctatgaagtgacaa |
151 |
Q |
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|||||||| ||||||||||||||||||| ||| || | |||||||||||| ||| ||||||||| ||| | |||||||||||||| | ||| ||||||| |
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| T |
15896996 |
aaaatgatgaaacaagcattgcaaacaaaggtggacaatgaaagaaggaagggacatgaaattgaacccatcgtgcaaaaatggctatctgatgtgacaa |
15896897 |
T |
|
| Q |
152 |
caattgaagatcagttgcaaaagtggctctctgatgaaaatagtattaaaaatagcaaaaaatgctttggtggacaatgctcaaatttagcatttaatta |
251 |
Q |
| |
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|||||| || ||| |||||| ||| ||||| ||||||||| | |||| || | || ||||| |||||||||||||| ||| || ||||||||||||| |
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| T |
15896896 |
ttattgaaaatgagtggcaaaaatggatctctaatgaaaataatgttaacaagaagaagaaatgttttggtggacaatgttcagatatagcatttaatta |
15896797 |
T |
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| Q |
252 |
ttcattgggaaaggaagccactaaaagccttgaaaatattacaagcatgaaggaaagaagaaaacaaattt |
322 |
Q |
| |
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|||||||||||| |||| |||||||| | ||| ||||||||||| |||||| | ||| ||||||||||| |
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| T |
15896796 |
ctcattgggaaagcaagcaactaaaaggatagaatatattacaagcctgaagg-aggaaaaaaacaaattt |
15896727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 129302 - 129386
Alignment:
| Q |
211 |
aaatgctttggtggacaatgctcaaatttagcatttaattattcattgggaaaggaagccactaaaagccttgaaaatattacaa |
295 |
Q |
| |
|
||||| ||||||||| | || ||||||| ||| |||||| |||||||||||| ||||| |||||||| |||| ||||||||| |
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| T |
129302 |
aaatgttttggtggaaagtgtccaaatttgacatataattactcattgggaaagcaagcctctaaaagcattgagtatattacaa |
129386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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