View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_18 (Length: 407)
Name: NF0808_low_18
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 407
Target Start/End: Original strand, 47193898 - 47194283
Alignment:
| Q |
22 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
121 |
Q |
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| T |
47193898 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
47193997 |
T |
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| Q |
122 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggagat |
221 |
Q |
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| T |
47193998 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggagat |
47194097 |
T |
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| Q |
222 |
gcttcttcagtcccatgaaaaaagaggcacccctcgttagttctttttcctttattgttccacaaaatgcttgaataacgtgcttgttctaataaattgt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47194098 |
gcttcttcagtcccatgaaaaaagaggcacccctcgttagttctttttcctttattgttccacaaaatgcttgaataacgtgcttgttctaataaattgt |
47194197 |
T |
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| Q |
322 |
attccttagcnnnnnnnnnnnnnnnnnnnnntgtatagttaatagtttacactatcttttctagtgaatatacatgagataactag |
407 |
Q |
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| T |
47194198 |
attccttagcaaaataaaataaaaaataaattgtatagttaatagtttacactatcttttctagtgaatatacatgagataactag |
47194283 |
T |
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