View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_19 (Length: 404)
Name: NF0808_low_19
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 35173135 - 35173393
Alignment:
| Q |
29 |
acatattatgaagacaaaaatgtttacgccctaacaaaaataacgattaatggattgtggagctaagaatgtaacttaagacaaagtcacgcatatcccc |
128 |
Q |
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| T |
35173135 |
acatattatgaagacaaaaatgtttacgccctaacaaaaataacggttaatggactgtggagccaagaatgtaacttaagacaaagtcacgcatatcccc |
35173234 |
T |
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| Q |
129 |
taactatagctaccacacatcttatatttaagttttaaaaaagtaacttaaatataggttttctatggacaaaagagaagaaggaccaaaaattattatt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
35173235 |
taactatagctaccacacatcttatatttaagttttaaaaaagtaacttaaatataggttttctatggataaaagagaagatggaccaaaaattattatt |
35173334 |
T |
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| Q |
229 |
ttacgatgatnnnnnnnncttgcatatccaatagttaaggttttaaattaaaattaagg |
287 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35173335 |
ttacgatgataaaaaaaacttgcatatccaatagttaaggttttaaattaaaattaagg |
35173393 |
T |
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