View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_2 (Length: 789)
Name: NF0808_low_2
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 11 - 789
Target Start/End: Original strand, 43698254 - 43699026
Alignment:
| Q |
11 |
cagagactagtaaaccaaaatagcatgaagctatgattgaggatcagagatacaaaccgataaataaggttatcattcaatccagctccgctgccaatga |
110 |
Q |
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| T |
43698254 |
cagagactagtaaaccaaaatagcatgaagctatgattgaggatcagagatacaaaccgataaataaggttatcattcaatccagctccactgccgatga |
43698353 |
T |
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| Q |
111 |
aggctctggaaatctcttcgtttactgtatttctctgtgtgatagaaattgcccacgcccttcctggagttaaaatatcacatacagttgtagatgaaat |
210 |
Q |
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| T |
43698354 |
aggctctggaaatctcttcatttactgtatttctctgtgtgatagaaattgcccacgcccttcctggagttaaaatatcacatacagttgtagatgaaat |
43698453 |
T |
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| Q |
211 |
ttctccaacagaggaggaatctgaggatgccaattcatcctgccacccagtcaagaaattatttgattagtactatatagtataaccataaccataagca |
310 |
Q |
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| T |
43698454 |
ttctccaacagaggaggaatcagaggatgccaattcatcctgccacccagtcaagaaattatttgattagtactatatagtataaccataaccataagca |
43698553 |
T |
|
| Q |
311 |
tttcagtggtaagacagtaaaacaatatctcatgccaaaacatttagataagcaacttaattaagtccatatttaataagtgcttatcaaccaatgccta |
410 |
Q |
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| T |
43698554 |
tttcagtggtaagaaagtaaaacaatatctcatgccaaaacatttagataagcaacttaattaagtccttatttattaagtgcttatcaaccaatgccta |
43698653 |
T |
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| Q |
411 |
catgatttaaaatataattacataaattaccccttcagttactgctatttgcagtctagaatggaaataccgctttaagcaatctggaagacatggcact |
510 |
Q |
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| T |
43698654 |
catgatttaaaatataatcacataaattaccccttcagttactgctatttgcagtctagcatggaaataccgctttaagcaatctggaagacatggcact |
43698753 |
T |
|
| Q |
511 |
gtactcataacccaagtaacaaacttccctacaggaatctgaacttccaagctcaaaacatcacaatccgatacatcaaacccaccttcatctttatcat |
610 |
Q |
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| T |
43698754 |
gtactcataacccaagtaacaaacttccctacaggaatctgaacttccaagctcaaaacatcacaatccaatacatcaaacccaccttcatctttatcat |
43698853 |
T |
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| Q |
611 |
caaccgccgacgtaaccaaatgacccaaatccggtacactcaaattccctttccctttccctttcaaatttctacaatcccacgacatagcccaacaaat |
710 |
Q |
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| T |
43698854 |
caaccgccgacgtaaccaaatgactcaaatccggtacactcaaa------ttccctttccctttcaaatttctacaatcccacgacatagcccaacaaat |
43698947 |
T |
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| Q |
711 |
tgaaagcaagagaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattcaaattccaaa |
789 |
Q |
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| T |
43698948 |
tgaaagcaagagaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattcaaattccaaa |
43699026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 534 - 786
Target Start/End: Complemental strand, 39526891 - 39526633
Alignment:
| Q |
534 |
cttccctacaggaatctgaacttccaagctcaaaacatcacaatccgatacatcaaacccaccttcatctttatcatcaac------------cgccgac |
621 |
Q |
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|||||| ||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
39526891 |
cttccccacacgaatctgaacttccaaactcaaaacatcacaatcccagacatcaaacccaccttcatctttatcatgaacacacaacgtaatcgccgac |
39526792 |
T |
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| Q |
622 |
gtaaccaaatgacccaaatccggtacactcaaattccctttccctttccctttcaaatttctacaatcccacgacatagcccaacaaattgaaagcaaga |
721 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
39526791 |
aaaaccaaatgagtcaaatccggtacactcaaattccctttccctttc------aaatttctacaatcctatgacatagcccaacaaattgaaagcaaga |
39526698 |
T |
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| Q |
722 |
gaaacacatgcttggggagaaggtacccgctaaccttacaatcaacatcatcagattcaaattcc |
786 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39526697 |
gaaacacatgcttggggagaagatacccgctaaccttgcaatcgacatcatcagattcaaattcc |
39526633 |
T |
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