View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_21 (Length: 378)
Name: NF0808_low_21
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 79 - 281
Target Start/End: Original strand, 42604100 - 42604302
Alignment:
| Q |
79 |
caaagccctagctgttgcagaaagaagaaagcaaaatcttgaatttttggcattaaaaacgatctatccgtatttgcctttcagccccaccaaccttgcc |
178 |
Q |
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|||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42604100 |
caaacccccagctcttgaagaaagaagaaagcaaaatcttgaatttttggcattaaaaacgatctatccgtatttgtctttcagccccaccaaccttgcc |
42604199 |
T |
|
| Q |
179 |
atctatcctttcataatgccatttctatttatattttaaaaactaagagaaagaagagaaacagattgaatatcacaccgaaacaatcaatttcaaaagt |
278 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
42604200 |
atctatcctttcataatggcatttctatttatattttaaaaactaagagaaagaagagaaatagattgaatatcacactgaaacaatcaatttcaaaagt |
42604299 |
T |
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| Q |
279 |
ttg |
281 |
Q |
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||| |
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| T |
42604300 |
ttg |
42604302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 49043818 - 49043630
Alignment:
| Q |
97 |
agaaagaagaaagcaaaatcttgaa---tttttggcattaaaaacgatctatccgtatttgcctttcagccccaccaaccttgccatctatcctttcata |
193 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49043818 |
agaaagaagaaagcaaaatcttgaagaatttttggcattaaaa-cgatctatccgtatttgtctttcagccccaccaaccttgccatctatcctttcata |
49043720 |
T |
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| Q |
194 |
atgccatttctatttatattttaaaaactaagagaaagaagag--aaacagattgaatatcacaccgaaacaatcaatttcaaaagtttg |
281 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49043719 |
atgccatttctatttatattttaaaagccaagagaaagaagagtaaaacagattgaatatcacactgaaacaatcaatttcaaaagtttg |
49043630 |
T |
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