View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_27 (Length: 341)
Name: NF0808_low_27
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 4631683 - 4631966
Alignment:
| Q |
30 |
ttttggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatg |
129 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |
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| T |
4631683 |
ttttggaaaattttgttgtagaggaatgacttattgtaggcaaacacatatttattaatttggttaaaagaaaactgatttaaatcatacatactacatg |
4631782 |
T |
|
| Q |
130 |
catataattccgaaaaactgtaaac-ataacatacgaaattcaagatgggtctatcatgcttgttaacttagattacgaagattctaaagtacttgtgct |
228 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4631783 |
catataattccgaaaatctgtaaacgataacatacgaaattcaagatgggtctaccatgcttgttaacttagattacgaagattctaaagtacttgtgct |
4631882 |
T |
|
| Q |
229 |
tgatggattataaaattacatttccaaaatgatctgaaaaatcaaggattaatattttcccttcactttgttgtttatgcaaag |
312 |
Q |
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| T |
4631883 |
tgatggattataaaattacatttccaaaatgatctgaaaaatcaaggattaatattttcccttcactttgttgtttatgcaaag |
4631966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 27002485 - 27002587
Alignment:
| Q |
34 |
ggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcata |
133 |
Q |
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||||||||||||| ||| ||||| ||||||| || ||||||| |||| ||||| || ||||||| |||||||| | || || | |||||| ||||||| |
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| T |
27002485 |
ggaaaattttgttatagaggaatagattattacagacaaacacagatttgttaatatgcttaaaagcaaactgatcccaaacaaagatattatatgcata |
27002584 |
T |
|
| Q |
134 |
taa |
136 |
Q |
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||| |
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| T |
27002585 |
taa |
27002587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 12074987 - 12075215
Alignment:
| Q |
37 |
aaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
136 |
Q |
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|||||||||| ||| |||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12074987 |
aaattttgttatagaggaatggattattgtaggcaaacacatatttgttaattcgtttaaaaggaaactgattcaaatcatacatattacatgtatataa |
12075086 |
T |
|
| Q |
137 |
ttccgaaaaactgtaaac-ataacatacgaaattcaagatgggtctatcatgcttgttaacttagattacgaagattctaaagtacttgtgcttgatgga |
235 |
Q |
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||| || ||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||| | |||| ||| |
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| T |
12075087 |
atccaaataaccataaacgataacatacgaaattcaagatgggtctaccatgctagttaacttagagtacaaagattctaaagtacttgcgtttgaagga |
12075186 |
T |
|
| Q |
236 |
ttataaaattacatttccaaaatgatctga |
265 |
Q |
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|| ||||||||||||||||||| ||||||| |
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| T |
12075187 |
tt-taaaattacatttccaaaacgatctga |
12075215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 875511 - 875454
Alignment:
| Q |
96 |
aaaggaaactgattcaaatcatacatattacatgcatataattccgaaaaactgtaaa |
153 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
875511 |
aaaggatactaattcaaatcatacatattacatgcatataaatccgaaaaactgtaaa |
875454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 29737555 - 29737498
Alignment:
| Q |
208 |
agattctaaagtacttgtgcttgatggattataaaattacatttccaaaatgatctga |
265 |
Q |
| |
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||||| ||||||||| |||| | |||||||||||||||||||||||||||||| |||| |
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| T |
29737555 |
agattttaaagtactcgtgcattatggattataaaattacatttccaaaatgacctga |
29737498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 27892693 - 27892811
Alignment:
| Q |
37 |
aaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
136 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27892693 |
aaattttgttgtagaggaacggattattgtaggcaaacacagatttgttaatttggttaaaaggaaactgattcaaatcatacatattacatgcatataa |
27892792 |
T |
|
| Q |
137 |
ttccgaaaaactgtaaaca |
155 |
Q |
| |
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|||||||||| ||||||| |
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| T |
27892793 |
atccgaaaaacggtaaaca |
27892811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 272633 - 272756
Alignment:
| Q |
30 |
ttttggaaaattttgttgtagtggaatggattattgtaggtaaacacatatttattaatttggttaaaaggaaactgattcaaatcatacatattacatg |
129 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
272633 |
ttttggaaaatattgttgtaaagaaacggattattgtaggcaaacacatatttattaatttggttaaaaggatactaattcaaatcatacatattacatg |
272732 |
T |
|
| Q |
130 |
catataattccgaaaaactgtaaa |
153 |
Q |
| |
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||||||| |||||||||||||||| |
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|
| T |
272733 |
catataaatccgaaaaactgtaaa |
272756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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