View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_29 (Length: 334)
Name: NF0808_low_29
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 38933290 - 38933130
Alignment:
| Q |
13 |
tgaactggtgtttctacaaaatgaagtttgcaaggaataataattaaatgtttggaatcaggacgagtttgacaaaaaatttgtggcatcttgattttgt |
112 |
Q |
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| T |
38933290 |
tgaactggtgtttctacaaaatgaagtttgcaaggaataataattaaatgtttggaatcaggacgagtttgacaaaaaaattgtgacatcttgattttgt |
38933191 |
T |
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| Q |
113 |
tgaagttctaaagtgtaacttttgtcataatcacgatgtcacactttgatttggccaaaca |
173 |
Q |
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| T |
38933190 |
tgaagctctaaagtgtaactttggtcataatcacgatgtcacactttgatttggccaaaca |
38933130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 38933013 - 38932953
Alignment:
| Q |
274 |
gctgaacccattccaagaacgaaattccaaacttaccttaacggattgaattctctcggcc |
334 |
Q |
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| T |
38933013 |
gctgaacccattccaagaacgaaatcacaaacttaccttaatggattgaattctctcggcc |
38932953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 38933119 - 38933066
Alignment:
| Q |
167 |
ccaaacatacaccaaatgtcactatgctaacgccagtttccacaattagccatg |
220 |
Q |
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| T |
38933119 |
ccaaacatacactaaatgtcagtatgctaacgccagtttccacaattagccatg |
38933066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 30007497 - 30007538
Alignment:
| Q |
104 |
tgattttgttgaagttctaaagtgtaacttttgtcataatca |
145 |
Q |
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| T |
30007497 |
tgattttgttgaagctcgaaagtgtaacttttgtcaaaatca |
30007538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 24627139 - 24627167
Alignment:
| Q |
104 |
tgattttgttgaagttctaaagtgtaact |
132 |
Q |
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| T |
24627139 |
tgattttgttgaagttctaaagtgtaact |
24627167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 23186895 - 23186927
Alignment:
| Q |
104 |
tgattttgttgaagttctaaagtgtaacttttg |
136 |
Q |
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| T |
23186895 |
tgattttgttgaagctctaaagtgtaacttttg |
23186927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 8110921 - 8110886
Alignment:
| Q |
100 |
atcttgattttgttgaagttctaaagtgtaacttttg |
136 |
Q |
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| T |
8110921 |
atcttgattttgttgaagttct-aagtgtaacttttg |
8110886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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