View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_3 (Length: 756)

Name: NF0808_low_3
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_3
NF0808_low_3
[»] chr3 (1 HSPs)
chr3 (114-727)||(4819921-4820534)
[»] chr8 (8 HSPs)
chr8 (635-706)||(29552820-29552891)
chr8 (639-706)||(14727789-14727856)
chr8 (635-706)||(15329884-15329955)
chr8 (635-706)||(15510253-15510324)
chr8 (635-706)||(27714374-27714445)
chr8 (635-706)||(28865978-28866049)
chr8 (636-705)||(26089260-26089332)
chr8 (635-706)||(28693147-28693219)
[»] chr1 (1 HSPs)
chr1 (637-706)||(26086400-26086469)
[»] chr7 (1 HSPs)
chr7 (635-706)||(17292617-17292688)


Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 114 - 727
Target Start/End: Complemental strand, 4820534 - 4819921
Alignment:
Q  114 agcagaaaagaactgaagataaagcaccttgccccgaaacaatgataacaatgacaaggtaaattgcaaaccaacgttgatatattgttgtttgtttatt 213  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4820534 agcagaaaagaactgaacataaagcaccttgccccgaaacaatgataacaatgacaaggtaaattgcaaaccaacgttgatatattgttgtttgtttatt 4820435  T
Q  214 tggccagaagtggttttgagttgcagatctcattagcattcgtaccatcatttatcttgtgacaataacttttgattcgcgtttccattattgaaacaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4820434 tggccagaagtggttttgagttgcagatctcattagcattcgtaccatcatttatcttgtgacaataacctttgattcgcgtttccattattgaaacaat 4820335  T
Q  314 gttatgatctattcagtttattaacgctgcaccgaaatcaattagagagccatataataatgttacaagccaacatgccagaaataaaaccgaaaagatg 413  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4820334 gttatgatctattcagtttcttaacgctgcaccgaaatcaattagagagacatataataatgttacaagccaacatgccagaaataaaaccgaaaagatg 4820235  T
Q  414 tgaacaactgtaagtgctatcacgatgaaagaaaagagataacaacccacaaatgaagtcactggatagaatactagcgtgcctaatcttccaccagttg 513  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4820234 tgaacaactgtaggtgctatcacgatgaaataaaagagataacaacccacaaatgaagtcactggatagaatactagcgtgcctaatcttccaccagttg 4820135  T
Q  514 ggatcagaatatatattgttatagttgatagggaaaaagaaagcatattcagatataaaaatatatcgaaataagctcctggcaagaccgatttcccagt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4820134 ggatcagaatatatattgttatagttgatagggaaaaagaaagcatattcagatatacaaatatatcgaaataagctcctggcaagaccgatttcccagt 4820035  T
Q  614 atttccccgtaaactccacccggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacctggtgga 713  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4820034 atttccccataaactccacccggtagaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtgga 4819935  T
Q  714 gacattgctgattg 727  Q
    ||||||||||||||    
T  4819934 gacattgctgattg 4819921  T

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Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 29552891 - 29552820
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  29552891 ggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccacc 29552820  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 639 - 706
Target Start/End: Complemental strand, 14727856 - 14727789
Alignment:
Q  639 gaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||| |||||||||||||||| || |||||| |||| ||| |||||||||||||||    
T  14727856 gaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccacc 14727789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 15329955 - 15329884
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||||||| |||||||||||||||| || |||||  |||| ||| |||||||||||||||    
T  15329955 ggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccacc 15329884  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 15510324 - 15510253
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||||||| |||||||||||||||| || |||||  |||| ||| |||||||||||||||    
T  15510324 ggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccacc 15510253  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 27714445 - 27714374
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||| || |||||||| | |||||| ||||| | | || |||||||||||||||||||||||||||||||    
T  27714445 ggtagacattgtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccacc 27714374  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 28866049 - 28865978
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||||||| |||||||||||||||| || |||||  || | ||| |||||||| ||||||    
T  28866049 ggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccacc 28865978  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 705
Target Start/End: Complemental strand, 26089332 - 26089260
Alignment:
Q  636 gtagaaatagtagaattggtggaagtgatgttcaaactactg---tcactagcattaacctgataaactccac 705  Q
    ||||||||||||||||||| |||||||||||||| || | ||   ||||||||| |||||||||||| |||||    
T  26089332 gtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctgataaattccac 26089260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 706
Target Start/End: Original strand, 28693147 - 28693219
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagca-ttaacctgataaactccacc 706  Q
    ||||||||||||||| || | |||||||||||||||| ||||||||| |||| | || |||||||| ||||||    
T  28693147 ggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccacc 28693219  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 706
Target Start/End: Original strand, 26086400 - 26086469
Alignment:
Q  637 tagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||  ||| ||  | |||||||||||||    
T  26086400 tagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccacc 26086469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 706
Target Start/End: Original strand, 17292617 - 17292688
Alignment:
Q  635 ggtagaaatagtagaattggtggaagtgatgttcaaactactgtcactagcattaacctgataaactccacc 706  Q
    ||||||||| |||||||||  ||||||| |||||| | || ||||||||| | ||||||||||||| |||||    
T  17292617 ggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacaccacc 17292688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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