View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_31 (Length: 317)

Name: NF0808_low_31
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_31
NF0808_low_31
[»] chr6 (3 HSPs)
chr6 (169-317)||(424604-424752)
chr6 (174-236)||(8512874-8512936)
chr6 (177-267)||(8524896-8524988)
[»] chr4 (3 HSPs)
chr4 (169-295)||(7205247-7205374)
chr4 (180-217)||(24154299-24154336)
chr4 (187-295)||(29235940-29236051)
[»] chr3 (6 HSPs)
chr3 (169-235)||(26147682-26147748)
chr3 (170-248)||(26149286-26149364)
chr3 (180-248)||(26119709-26119777)
chr3 (169-229)||(26186173-26186233)
chr3 (169-229)||(26214780-26214840)
chr3 (180-248)||(26241975-26242043)
[»] chr2 (1 HSPs)
chr2 (180-273)||(37039117-37039211)
[»] chr7 (3 HSPs)
chr7 (169-217)||(24378517-24378565)
chr7 (211-294)||(25653813-25653898)
chr7 (169-215)||(27163340-27163386)
[»] chr5 (1 HSPs)
chr5 (169-217)||(29999891-29999939)
[»] chr1 (5 HSPs)
chr1 (169-217)||(28704920-28704968)
chr1 (169-211)||(6912779-6912821)
chr1 (181-294)||(11643746-11643860)
chr1 (171-248)||(27580454-27580530)
chr1 (180-217)||(32623871-32623908)
[»] chr8 (1 HSPs)
chr8 (180-273)||(41429373-41429467)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 424752 - 424604
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctctaaagtgtaaaaatgtaaaa 268  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  424752 caatatacccatgtttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctctaaagtgtaaaaatgtaaaa 424653  T
Q  269 gaataggaattattaacaaagttaatagaagagctaaccctcttaattt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  424652 gaataggaattattaacaaagttaatagaagagctaaccctcttaattt 424604  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 8512936 - 8512874
Alignment:
Q  174 tacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaac 236  Q
    ||||| ||||||| |||||||||||||| |||||||||| |||| || ||||| || ||||||    
T  8512936 tacccctatttatattacatatttttctgcaatatataaaaaatattatatgagaacattaac 8512874  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 267
Target Start/End: Complemental strand, 8524988 - 8524896
Alignment:
Q  177 ccatatttatgttacatattttt-ctacaatatataataaatgttttatgaaaatattaactatttctctct-ctaaagtgtaaaaatgtaaa 267  Q
    ||||||||||||||||||||||| || || |||||||||||| || ||||| || | |||||| |||  ||| |||||| ||||| |||||||    
T  8524988 ccatatttatgttacatatttttcctgcattatataataaatattatatgagaacaataactaattcattctcctaaagggtaaacatgtaaa 8524896  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 7205247 - 7205374
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctct-ctaaagtgtaaaaatgtaaa 267  Q
    |||||||||| ||||||| ||||||||||||||||||||| | ||||||  | ||||||||||||||||  || ||||| |||||| |||||  ||||||    
T  7205247 caatatacccctatttatattacatatttttctacaatatgtgataaatactctatgaaaatattaacttattatctctcctaaagggtaaacttgtaaa 7205346  T
Q  268 agaataggaattattaacaaagttaata 295  Q
    | ||||| |||| | |||||| ||||||    
T  7205347 acaatagaaattgtcaacaaaattaata 7205374  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 24154299 - 24154336
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaat 217  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  24154299 tatttatgttgcatatttttctgcaatatataataaat 24154336  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 29235940 - 29236051
Alignment:
Q  187 gttacatatttttctacaatat---ataataaatgttttatgaaaatattaactatttctctctctaaagtgtaaaaatgtaaaagaataggaattatta 283  Q
    ||||||||||||||||||||||   ||||||||| ||||||||||| || |  || ||||||| |||||   ||||  ||||||| ||||| |||| | |    
T  29235940 gttacatatttttctacaatatataataataaatattttatgaaaacataagttaattctctccctaaaagataaacttgtaaaacaatagcaattgtca 29236039  T
Q  284 acaaagttaata 295  Q
    ||||| ||||||    
T  29236040 acaaaattaata 29236051  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 26147682 - 26147748
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaa 235  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||| || |||||||| |||||    
T  26147682 caatatactcctatttatgttacatatttttctacaatatgtaataaatattctatgaaaagattaa 26147748  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 26149286 - 26149364
Alignment:
Q  170 aatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc 248  Q
    ||||||| | ||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |||||  | |||||||||    
T  26149286 aatatactcctatttatgttacatacttttctacaatatgtaataaatatttaatgaaaacattaagcaattctctctc 26149364  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 26119709 - 26119777
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc 248  Q
    ||||||||||||| ||||||||||||||| ||| |||| || | |||||| |||||  | |||||||||    
T  26119709 tatttatgttacaaatttttctacaatatgtaacaaatattctttgaaaacattaatcaattctctctc 26119777  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 26186173 - 26186233
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaa 229  Q
    |||||||| | |||||||| |||||||||||| ||||||| ||| |||| || ||||||||    
T  26186173 caatatactcctatttatgctacatatttttcaacaatatgtaacaaatattctatgaaaa 26186233  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 26214780 - 26214840
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaa 229  Q
    |||||||| | |||||||| |||||||||||| ||||||| ||| |||| || ||||||||    
T  26214780 caatatactcctatttatgctacatatttttcaacaatatgtaacaaatattctatgaaaa 26214840  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 26241975 - 26242043
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc 248  Q
    ||||||||||||  ||||||||||||||| ||| |||| || |||||||| |||||  | |||||||||    
T  26241975 tatttatgttaccgatttttctacaatatgtaacaaatattctatgaaaacattaatcaattctctctc 26242043  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 37039117 - 37039211
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc-taaagtgtaaaaatgtaaaagaata 273  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||| ||  |||| |||||| || ||||  ||||| |||||||| ||||    
T  37039117 tatttatgttgcatatttttctacaatatataataaatactttatgaaaacatccactaattctctttcataaaaggtaaacatgtaaaacaata 37039211  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24378517 - 24378565
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaat 217  Q
    |||||||||| ||||||||||||||||||||||  ||||| ||||||||    
T  24378517 caatatacccctatttatgttacatatttttctttaatatgtaataaat 24378565  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 25653813 - 25653898
Alignment:
Q  211 aataaatgttttatgaaaatattaacta--tttctctctctaaagtgtaaaaatgtaaaagaataggaattattaacaaagttaat 294  Q
    |||||| | |||||||||||||||||||  ||||||||| ||||  ||||||||  ||| |||||  |||||| ||||||||||||    
T  25653813 aataaacggtttatgaaaatattaactacttttctctctataaatggtaaaaatagaaaggaataacaattatcaacaaagttaat 25653898  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 27163386 - 27163340
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataa 215  Q
    |||||||||  |||||||||||||||||||||| ||| |||||||||    
T  27163386 caatatacctgtatttatgttacatatttttctgcaacatataataa 27163340  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 29999891 - 29999939
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaat 217  Q
    ||||||| || |||||||||| ||||||||| |||||||||||||||||    
T  29999891 caatatatccttatttatgttgcatatttttatacaatatataataaat 29999939  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 28704968 - 28704920
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatataataaat 217  Q
    |||||||||| |||||||||||||||||||| | |||||| ||||||||    
T  28704968 caatatacccctatttatgttacatatttttattcaatatgtaataaat 28704920  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 6912821 - 6912779
Alignment:
Q  169 caatatacccatatttatgttacatatttttctacaatatata 211  Q
    |||||||||| ||||||| |||||||||||||| |||||||||    
T  6912821 caatatacccctatttatattacatatttttcttcaatatata 6912779  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 11643860 - 11643746
Alignment:
Q  181 atttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc-taaagtgtaaaaatgtaaaagaataggaatt 279  Q
    ||||||||| ||||||||||| |||||||||||||||  | |||||||| || ||||| || | | || ||||| ||||| |||||||| ||||  ||||    
T  11643860 atttatgttgcatatttttctgcaatatataataaatactctatgaaaacatcaactaattatttttcataaagggtaaacatgtaaaacaataacaatt 11643761  T
Q  280 attaacaaagttaat 294  Q
     | |||||| |||||    
T  11643760 gtcaacaaaattaat 11643746  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 27580454 - 27580530
Alignment:
Q  171 atatacccatatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc 248  Q
    |||||||| |||||||||||||| |||||||||| ||| |||||||| || ||| | || ||||| || |||||||||    
T  27580454 atataccc-tatttatgttacatgtttttctacactatgtaataaatattctataataacattaattaattctctctc 27580530  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 32623871 - 32623908
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaat 217  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32623871 tatttatgttacatatttttcttcaatatgtaataaat 32623908  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 41429373 - 41429467
Alignment:
Q  180 tatttatgttacatatttttctacaatatataataaatgttttatgaaaatattaactatttctctctc-taaagtgtaaaaatgtaaaagaata 273  Q
    |||||||||| ||||||||||||||||||| |||||||  | |||||||| ||  |||  |||||| || ||||| ||||| |||||||| ||||    
T  41429373 tatttatgttgcatatttttctacaatatacaataaatactctatgaaaacatccactgattctctttcataaagggtaaacatgtaaaacaata 41429467  T

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