View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_33 (Length: 304)
Name: NF0808_low_33
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 43619130 - 43619347
Alignment:
| Q |
17 |
acttggcgcatctttcttaatgaacaaggaatactctctgactttacctgcgaactccttacccatcatacgatcaagagcaatatcaatgtcattggaa |
116 |
Q |
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| T |
43619130 |
acttggcgcatcttccttaaggtacaaggaatactctctgactttatccgcaaactccttacccatcatatgatcaagagcaatatcaatgtcatttgaa |
43619229 |
T |
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| Q |
117 |
tcttttcccagaagctacacacaaaaaatcgatagccaaatgatttattaacnnnnnnngaaagtaacggaacaatgaatgagggaaaaagaatgattcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43619230 |
tcttttcccagaagctacacacaaaaaatcgatagccaaatgatttattaacaaaaaaagaaagtatcggaacaatgaatgagggaaaaagaatgattcc |
43619329 |
T |
|
| Q |
217 |
aacgattggaatttgtac |
234 |
Q |
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|||||||| ||||||||| |
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| T |
43619330 |
aacgattgtaatttgtac |
43619347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 43650167 - 43650292
Alignment:
| Q |
17 |
acttggcgcatctttcttaatgaacaaggaatactctctgactttacctgcgaactccttacccatcatacgatcaagagcaatatcaatgtcattggaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||||||||||| | | ||||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
43650167 |
acttggcgcatcttccttaatgaacaacaaataatctctgactttttccacaaactcagtacccatcatatcatcaagagcaatatcaatgtcataacaa |
43650266 |
T |
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| Q |
117 |
tcttttcccagaagctacacacaaaa |
142 |
Q |
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|||||||||| |||||||| |||||| |
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| T |
43650267 |
tcttttcccaaaagctacaaacaaaa |
43650292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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