View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_34 (Length: 299)
Name: NF0808_low_34
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 36871096 - 36871357
Alignment:
| Q |
9 |
agcagagatcttcatgtactcttcaaacacaaattttgggtacacattgtgtttttcctctgtctgtttttccaacaattctggagcagggtaaatgaca |
108 |
Q |
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| T |
36871096 |
agcatagatcttcatgtactcttcaaacacaaattttgggtacacattgtgtttttcctctgtctgtttttccaacaattctggagcagggtaaatgaca |
36871195 |
T |
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| Q |
109 |
gcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttgtta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871196 |
gcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttgtta |
36871295 |
T |
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| Q |
209 |
ttacctgtttgtacaaaatagtgtcagataaagtgtcctgttttttgcacttgagagatata |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36871296 |
ttacctgtttgtacaaaatagtgtcagataaagtgtcctgttttttgcacttgagagatata |
36871357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 37629884 - 37629765
Alignment:
| Q |
97 |
gggtaaatgacagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtact |
196 |
Q |
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||||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
37629884 |
gggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtact |
37629785 |
T |
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| Q |
197 |
tgccatttgttattacctgt |
216 |
Q |
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| T |
37629784 |
tgccatttgttattacctgt |
37629765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 8927715 - 8927603
Alignment:
| Q |
106 |
acagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatttg |
205 |
Q |
| |
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||||||||| |||| || ||||||||||| |||||||||||||| | |||| |||||| || || || | ||| ||||||||||||||| ||||||| |
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| T |
8927715 |
acagcatcattccctggattgtagaatgaagctatggacattctagcaccatctgtttgagcaattactctgtgcatcacactcttgtacttcccatttg |
8927616 |
T |
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| Q |
206 |
ttattacctgttt |
218 |
Q |
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|||| |||||||| |
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| T |
8927615 |
ttatcacctgttt |
8927603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 55528466 - 55528393
Alignment:
| Q |
130 |
aatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtacttgccatt |
203 |
Q |
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||||| ||||||||||||||| | |||| |||||| || || |||||||| |||||||||||| |||||||| |
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| T |
55528466 |
aatgaagctatggacattcttttcccatctgtttgagcaattacacggtgcaacacactcttgtatttgccatt |
55528393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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