View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_39 (Length: 290)

Name: NF0808_low_39
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_39
NF0808_low_39
[»] chr8 (2 HSPs)
chr8 (61-248)||(4510488-4510675)
chr8 (110-165)||(43208364-43208419)
[»] chr2 (1 HSPs)
chr2 (71-179)||(43433952-43434060)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 4510488 - 4510675
Alignment:
Q  61 ataaagaggaaggattcttgaagtacttaggaattggcctgagaagaacattcaagtcattgttgtaactgacggagagcggatcttgggacttggggat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4510488 ataaagaggaaggattcttgaagtacttaggaattggcctgagaagaacattcaagtcattgttgtaactgacggagagcggatcttgggacttggggat 4510587  T
Q  161 cttggttgtcaagtaatttctcttatatttgattgcaaatattatgatcattatattcatatgatctgacactgtaatatctcctttg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4510588 cttggttgtcaagtaatttctcttatatttgattgcaaatattatgatcattatattcatatgatctgacactgtaatatctcctttg 4510675  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 43208419 - 43208364
Alignment:
Q  110 attcaagtcattgttgtaactgacggagagcggatcttgggacttggggatcttgg 165  Q
    |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||    
T  43208419 attcaagttattgttgtaactgacggtgagcggattttaggactcggagatcttgg 43208364  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 43434060 - 43433952
Alignment:
Q  71 aggattcttgaagtacttaggaattggcctgagaagaacattcaagtcattgttgtaactgacggagagcggatcttgggacttggggatcttggttgtc 170  Q
    |||||||  |||||||| || || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||    
T  43434060 aggattcaagaagtactgagaaactggcctgagaagaacattcaagtcatagtcgtaactgacggagaacggatcttgggtcttggggatctaggttgtc 43433961  T
Q  171 aagtaattt 179  Q
    | |||||||    
T  43433960 aggtaattt 43433952  T

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