View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_4 (Length: 669)
Name: NF0808_low_4
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 96 - 381
Target Start/End: Original strand, 31073810 - 31074096
Alignment:
| Q |
96 |
taaatatttagcttattnnnnnnntagtctttttcattgattataattataagtttatagcttgattgctatttatccatgtaaatgtatttagttttgt |
195 |
Q |
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| T |
31073810 |
taaatatttagcttattaaaaaaatagtcgttttcatttattataattataagtttatagtttgattgctatttatccatgtaaatgtatttagttttgt |
31073909 |
T |
|
| Q |
196 |
ttttcatctgtaccagcaactaccgattggatgctgatgtggcacataaatcttatgtacatgtcatgtatgcatgtcatgtggctttctgtttgccacc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31073910 |
ttttcatctgtaccagcaactaccgattggatgctgatgtggcacataaatcttatgtacatgtcatgtatgcatgtcatgtggctttctgtttgccacc |
31074009 |
T |
|
| Q |
296 |
ccaaacaaaatatattgaaacnnnnnnnnnnaggaaaaaatatatggaaagatattgttaggaactaaaa-aatggaaattttctcc |
381 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
31074010 |
ccaaacaaaatatattgaaacttttttttttagggaaaaatatatggaaatatattgttaggaactaaaagaatggaaattttctcc |
31074096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 457 - 658
Target Start/End: Original strand, 31074173 - 31074375
Alignment:
| Q |
457 |
ttcatgctacgaggcctaaatgcgcaattatttaataaataatttagcatgaatttatcattatttaccaagtctaaaaacagtannnnnnn-aatgtac |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31074173 |
ttcatgctacgaggcctaaatgcgcaattatttaataaataatttagcatgaatttatcattatttaccaagtctaaaaacagtattttttttaatgtac |
31074272 |
T |
|
| Q |
556 |
ttttatttgtttcaatctctataatttcttattcacaacaataaaactatatatattttgtttatttatcttttaatacaccaagtggattgttagtctt |
655 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31074273 |
ttttatttgtttcaatctctataatttcttattcacaacaataaaactatatatattttgtttatttatcttttaataccccaagtggattgttagtctt |
31074372 |
T |
|
| Q |
656 |
cat |
658 |
Q |
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||| |
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|
| T |
31074373 |
cat |
31074375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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