View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_42 (Length: 281)
Name: NF0808_low_42
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 42 - 233
Target Start/End: Original strand, 5677399 - 5677590
Alignment:
| Q |
42 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
141 |
Q |
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| T |
5677399 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
5677498 |
T |
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| Q |
142 |
aatcaacaactggtctctgttgagatgatacagaagacgacatcactccgtcggagccactatcacttcttacagatgtacacaattgactt |
233 |
Q |
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| T |
5677499 |
aatcaacaactggtctctgttgagatgatacagaagacgacatcactccgtcggagccactttcacttcttacagatgtacacaattgactt |
5677590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 39778012 - 39777900
Alignment:
| Q |
42 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
141 |
Q |
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|||||||||||| || | | |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
39778012 |
ataggaccaataccacaatttttaaaccctctagccatcattgcaattagaactctttggaaaaagtcaattttaagaactgttagatcttcagcccacc |
39777913 |
T |
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| Q |
142 |
aatcaacaactgg |
154 |
Q |
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| T |
39777912 |
aatcaacagctgg |
39777900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 47798162 - 47798250
Alignment:
| Q |
78 |
atcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccaccaatcaacaactggtctctgttgaga |
166 |
Q |
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|||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| |
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| T |
47798162 |
atcattgcaattagaactctttggaaaaagacaattctaagaacagttagatcttcagcccaccaatcaatagctggcctctggtgaga |
47798250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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