View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_46 (Length: 274)
Name: NF0808_low_46
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 18335882 - 18336121
Alignment:
| Q |
4 |
aatcatttcatcatgctattattcgatccttggtcaaggtttggaagagtttagcttcgtttaaggttcaggtttt-ctcgtggctattgtttatgaata |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
18335882 |
aatcatttcatcatgctattattcgatccttggtcaaggtttggaagagtttagcttcgtttaaggttcaggtttttctcgtggccattgtttatgaata |
18335981 |
T |
|
| Q |
103 |
aagttcaaactcgtgttaatctcttaagatgcagtgttttggtcgactaaaccgatacaacatgttgtttttattgttacctaggttgaatcgatcgatc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18335982 |
aagttcaaactcgtgttaatctcttaagatgcagtgttttggtcgactaaaccgatacaacatgttgtttttattgttacccaggttgaatcgatcgatc |
18336081 |
T |
|
| Q |
203 |
atttgtttgttcattattatcctatcgtgtccagagtgtg |
242 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
18336082 |
atttgtctgttcattattatcctatcgtgtccagagtgtg |
18336121 |
T |
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