View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_5 (Length: 617)

Name: NF0808_low_5
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_5
NF0808_low_5
[»] chr1 (2 HSPs)
chr1 (320-588)||(45073677-45073945)
chr1 (73-253)||(45073422-45073609)
[»] chr2 (4 HSPs)
chr2 (320-588)||(8880538-8880806)
chr2 (342-526)||(8884662-8884846)
chr2 (73-253)||(8880281-8880468)
chr2 (79-190)||(8884087-8884201)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 320 - 588
Target Start/End: Original strand, 45073677 - 45073945
Alignment:
Q  320 gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45073677 gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct 45073776  T
Q  420 gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcaatccatgatcagtcccataaaacaaaccaaccaagtccttctttagcttctc 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45073777 gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcgatccatgatcagtcccataaaacaaaccaaccaagtccttcttcagcttctc 45073876  T
Q  520 tgtctcaatatctgtcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 588  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45073877 cgtctcaatatctgtcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 45073945  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 73 - 253
Target Start/End: Original strand, 45073422 - 45073609
Alignment:
Q  73 agattattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag 172  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45073422 agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag 45073521  T
Q  173 tttgttagctgcagaacacaaactaagttaacg-------taagcagaacatgataagttcccttccaaacacaaatcattgtctaac 253  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45073522 tttgttagctgcagaacacaaactaagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtctaac 45073609  T

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Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 320 - 588
Target Start/End: Original strand, 8880538 - 8880806
Alignment:
Q  320 gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct 419  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||  ||||||||||||||    
T  8880538 gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcgagct 8880637  T
Q  420 gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcaatccatgatcagtcccataaaacaaaccaaccaagtccttctttagcttctc 519  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||  ||||||||||||||||||| ||||||||    
T  8880638 gactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttctc 8880737  T
Q  520 tgtctcaatatctgtcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 588  Q
     |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880738 cgtctcactttctggcactatcacctccgcaactgccacatcggcagaaggctctgaaccccactcatc 8880806  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 342 - 526
Target Start/End: Original strand, 8884662 - 8884846
Alignment:
Q  342 cttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagctgactaataagctcaaaaatctc 441  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||  |||||| || |||||| |||||||||||| ||||||    
T  8884662 cttacgcaagaatccattttccattgagcaaactcaaggcatcagtggaagcaggtgtgggattcttagcttccagctgagtaataagctcaacaatctc 8884761  T
Q  442 cgctcttgtctcactcgcggctttcaatccatgatcagtcccataaaacaaaccaaccaagtccttctttagcttctctgtctca 526  Q
     ||||| || |||||||  |||||||||||| ||||||||||||||||| ||||||||||  ||||||| |||||||| ||||||    
T  8884762 agctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctccgtctca 8884846  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 73 - 253
Target Start/End: Original strand, 8880281 - 8880468
Alignment:
Q  73 agattattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag 172  Q
    |||| ||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  8880281 agataattcttcaacctcgagtaatggcagtagcccgcttgacaacaatggaaataaacctgcataggatgtatacctgcggaataaatccaactataag 8880380  T
Q  173 tttgttagctgcagaacacaaact-aagttaac-------gtaagcagaacatgataagttcccttccaaacacaaatcattgtctaac 253  Q
    ||||||||||||||||||||| || ||||||||        ||||||||| |||| || ||||||||||||||||||||||||||||||    
T  8880381 tttgttagctgcagaacacaagctaaagttaacattaataataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaac 8880468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 8884087 - 8884201
Alignment:
Q  79 ttcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcgga---ataaatccaaccatgagttt 175  Q
    ||||||||||  ||| ||||||||||| || || || ||||||||||||||||| ||| ||||||||||||||  ||   | ||||| ||||| ||||||    
T  8884087 ttcttcaaccgtaagtaatggcagtagtccgctcgaaagcaatggaaataaaccggcaaaggatgtatacctgaagaaccacaaatcaaaccacgagttt 8884186  T
Q  176 gttagctgcagaaca 190  Q
     ||||||||||||||    
T  8884187 attagctgcagaaca 8884201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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