View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_50 (Length: 267)
Name: NF0808_low_50
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 29750938 - 29750824
Alignment:
| Q |
30 |
cattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcac |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29750938 |
cattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgaac |
29750839 |
T |
|
| Q |
130 |
aatttcttttccaat |
144 |
Q |
| |
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||||||||| ||||| |
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| T |
29750838 |
aatttctttcccaat |
29750824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 29602356 - 29602470
Alignment:
| Q |
30 |
cattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcac |
129 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29602356 |
cattgtccctaacaaacttccactcttctatatcatcttttaagaacaataaactccccaatgttcttagggccaaaggaagccctccacatttttgaac |
29602455 |
T |
|
| Q |
130 |
aatttcttttccaat |
144 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
29602456 |
aatttctttcccaat |
29602470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 29743905 - 29743787
Alignment:
| Q |
30 |
cattgtccctaacaaacttccactcttcaatatcatcttttaa----gaacaatgaactccccaatgttcttagggccaaaggaagccctccacattttt |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29743905 |
cattgtccctaacaaacttccactcttcaatatcatcttttaattaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacattttt |
29743806 |
T |
|
| Q |
126 |
gcacaatttcttttccaat |
144 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
29743805 |
gcacaatttctttcccaat |
29743787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 29597158 - 29597244
Alignment:
| Q |
176 |
taagcaaacatatggttgcattgc-ttgtctacgtaaaatatttatttagtttaactttgatatactagtagctcaagaataatcta |
261 |
Q |
| |
|
|||||||||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
29597158 |
taagcaaacaaatggttgcattgcattgtgtgtgtaaaatatttatttagtttaactttgatatacttgtagctcaagaaaaatcta |
29597244 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 29753373 - 29753320
Alignment:
| Q |
208 |
gtaaaatatttatttagtttaactttgatatactagtagctcaagaataatcta |
261 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
29753373 |
gtaaaatatttatttagtttagctttgatatactagtagctcaagaaaaatcta |
29753320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 49341157 - 49341056
Alignment:
| Q |
43 |
aaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcacaatttcttttcca |
142 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
49341157 |
aaacttccactcttctatatcatcttttaagaatagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttccca |
49341058 |
T |
|
| Q |
143 |
at |
144 |
Q |
| |
|
|| |
|
|
| T |
49341057 |
at |
49341056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 49352533 - 49352432
Alignment:
| Q |
43 |
aaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcacaatttcttttcca |
142 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
49352533 |
aaacttccactcttcaacatcaaattttaagaatagagaactccctaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttccca |
49352434 |
T |
|
| Q |
143 |
at |
144 |
Q |
| |
|
|| |
|
|
| T |
49352433 |
at |
49352432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 35158056 - 35157942
Alignment:
| Q |
30 |
cattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcac |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| |
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|
| T |
35158056 |
cattgtccctaacaaacttccactcttgtatatcaacttttaagaacagcgaactccccaatgtccttagggccaatggaagccctccacatttaagcac |
35157957 |
T |
|
| Q |
130 |
aatttcttttccaat |
144 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
35157956 |
aatatcttttccaat |
35157942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 32783736 - 32783837
Alignment:
| Q |
43 |
aaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcacaatttcttttcca |
142 |
Q |
| |
|
||||||||||||||| | |||| |||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
32783736 |
aaacttccactcttccacatcaacttttaggaatagagaactccccgatgttcttagggccaaaggaagccctccacatttttgtacaatttctttccca |
32783835 |
T |
|
| Q |
143 |
at |
144 |
Q |
| |
|
|| |
|
|
| T |
32783836 |
at |
32783837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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