View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_53 (Length: 253)

Name: NF0808_low_53
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_53
NF0808_low_53
[»] chr3 (1 HSPs)
chr3 (1-234)||(42603646-42603877)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-41)||(8111-8151)
[»] chr2 (4 HSPs)
chr2 (2-83)||(27863906-27863987)
chr2 (1-53)||(12238209-12238261)
chr2 (2-35)||(16865928-16865961)
chr2 (1-53)||(30804356-30804408)
[»] chr7 (2 HSPs)
chr7 (5-41)||(19683440-19683476)
chr7 (1-53)||(28039833-28039885)
[»] chr6 (1 HSPs)
chr6 (1-32)||(2255937-2255968)
[»] chr4 (2 HSPs)
chr4 (2-41)||(22347289-22347328)
chr4 (2-35)||(22057970-22058003)
[»] chr8 (1 HSPs)
chr8 (1-50)||(17696177-17696226)
[»] chr5 (1 HSPs)
chr5 (2-35)||(33535387-33535420)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-53)||(166774-166826)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 42603877 - 42603646
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagctttaagctattttataaatcttccgcaataagttcgtcatctattata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||     
T  42603877 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagctttaagctattttataaatattccgcaataaattcgtcatctattat- 42603779  T
Q  101 aaattagtttatcaactattcactatttannnnnnnacaaaacggagcctaagttcgttggccatatagggtcaagtttaggatcatatcatttaacgtg 200  Q
    ||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  42603778 aaactagtttatcaactattcactattta-ttttttacaaaacggagcctaagttcgttggccatataggttcaagtttaggatcatgtcatttaacgtg 42603680  T
Q  201 gtaggaaatcgagtggttaaagaaggatgatgtc 234  Q
    |||||||||||||| ||| |||||||||||||||    
T  42603679 gtaggaaatcgagttgtttaagaaggatgatgtc 42603646  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8111 - 8151
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttat 41  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8111 ctaattttatcaaacactacaaattcaatcaattaacttat 8151  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 27863906 - 27863987
Alignment:
Q  2 taattttattaaacactacaaattcaatcaattaacttatatgctataagctttaagctattttataaatcttccgcaataa 83  Q
    ||||||||| ||||||||||||||||||||  ||| |||| | ||||||||| |||| |  |||||||||| ||||| ||||    
T  27863906 taattttatcaaacactacaaattcaatcagctaaattattttctataagctataagttggtttataaatcatccgctataa 27863987  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12238261 - 12238209
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 53  Q
    |||||||||  |||||||||||||||||||||||| ||||| || ||||||||    
T  12238261 ctaattttacaaaacactacaaattcaatcaattagcttatctgttataagct 12238209  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 16865961 - 16865928
Alignment:
Q  2 taattttattaaacactacaaattcaatcaatta 35  Q
    ||||||||| ||||||||||||||||||||||||    
T  16865961 taattttatcaaacactacaaattcaatcaatta 16865928  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30804408 - 30804356
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 53  Q
    |||||||||  |||||||||||||||||| | ||| ||||| |||||||||||    
T  30804408 ctaattttacgaaacactacaaattcaattagttagcttatctgctataagct 30804356  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 19683476 - 19683440
Alignment:
Q  5 ttttattaaacactacaaattcaatcaattaacttat 41  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19683476 ttttatcaaacactacaaattcaatcaattaacttat 19683440  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28039885 - 28039833
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 53  Q
    |||||||||| ||||||||||||| ||||||||||| |||  |||||| ||||    
T  28039885 ctaattttatcaaacactacaaatgcaatcaattaatttaattgctatcagct 28039833  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2255937 - 2255968
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  2255937 ctaattttattaaacactacaaattcaatcaa 2255968  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 22347328 - 22347289
Alignment:
Q  2 taattttattaaacactacaaattcaatcaattaacttat 41  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  22347328 taattttattaaatactacaaattcaatcagttaacttat 22347289  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 22058003 - 22057970
Alignment:
Q  2 taattttattaaacactacaaattcaatcaatta 35  Q
    |||||||| |||||||||||||||||||||||||    
T  22058003 taattttactaaacactacaaattcaatcaatta 22057970  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17696177 - 17696226
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataa 50  Q
    ||||||||||||||||||||||||| | |||||||| |||| || |||||    
T  17696177 ctaattttattaaacactacaaatttattcaattaatttatttgttataa 17696226  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 33535387 - 33535420
Alignment:
Q  2 taattttattaaacactacaaattcaatcaatta 35  Q
    ||||||||| ||||||||||||||||||||||||    
T  33535387 taattttatcaaacactacaaattcaatcaatta 33535420  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 166774 - 166826
Alignment:
Q  1 ctaattttattaaacactacaaattcaatcaattaacttatatgctataagct 53  Q
    |||||||||  ||||||||||||||||||||  || ||||| |||||||||||    
T  166774 ctaattttaccaaacactacaaattcaatcagctagcttatttgctataagct 166826  T

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