View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_54 (Length: 251)

Name: NF0808_low_54
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_54
NF0808_low_54
[»] chr5 (15 HSPs)
chr5 (1-240)||(31912110-31912349)
chr5 (1-156)||(21943741-21943896)
chr5 (21-157)||(30100611-30100744)
chr5 (21-157)||(17497141-17497277)
chr5 (23-154)||(19491820-19491951)
chr5 (35-152)||(21211419-21211536)
chr5 (21-153)||(20429878-20430010)
chr5 (22-157)||(2555586-2555721)
chr5 (35-157)||(13753226-13753348)
chr5 (78-154)||(13753432-13753508)
chr5 (1-58)||(34419606-34419663)
chr5 (1-157)||(10760005-10760160)
chr5 (100-155)||(34419676-34419731)
chr5 (96-154)||(30852586-30852644)
chr5 (51-156)||(43548948-43549053)
[»] chr1 (9 HSPs)
chr1 (1-153)||(37608098-37608249)
chr1 (3-157)||(50335569-50335723)
chr1 (49-157)||(42847192-42847300)
chr1 (1-154)||(13735571-13735723)
chr1 (21-155)||(8097714-8097848)
chr1 (49-157)||(32373983-32374090)
chr1 (51-154)||(50335441-50335544)
chr1 (51-144)||(37607982-37608075)
chr1 (21-146)||(11633276-11633401)
[»] chr3 (22 HSPs)
chr3 (1-155)||(26498547-26498701)
chr3 (1-157)||(15031346-15031502)
chr3 (23-160)||(20759075-20759212)
chr3 (1-157)||(38498229-38498385)
chr3 (4-154)||(11989045-11989195)
chr3 (21-153)||(14434641-14434773)
chr3 (1-157)||(21514870-21515026)
chr3 (76-157)||(33343205-33343286)
chr3 (23-154)||(18445405-18445536)
chr3 (23-154)||(41984905-41985036)
chr3 (1-121)||(48755453-48755574)
chr3 (51-154)||(15031188-15031291)
chr3 (79-121)||(1426679-1426721)
chr3 (1-107)||(44967981-44968087)
chr3 (80-157)||(15005163-15005240)
chr3 (76-170)||(43562593-43562689)
chr3 (51-154)||(26498692-26498795)
chr3 (51-154)||(48755327-48755430)
chr3 (52-154)||(33343006-33343108)
chr3 (30-123)||(39541765-39541858)
chr3 (1-155)||(26920281-26920435)
chr3 (66-154)||(21514744-21514832)
[»] chr6 (11 HSPs)
chr6 (1-157)||(19295278-19295434)
chr6 (35-157)||(10587884-10588006)
chr6 (21-157)||(13536707-13536843)
chr6 (1-157)||(21222462-21222618)
chr6 (1-157)||(26705154-26705310)
chr6 (1-157)||(25089278-25089434)
chr6 (51-154)||(13536560-13536663)
chr6 (1-114)||(10862139-10862251)
chr6 (78-154)||(10588074-10588150)
chr6 (51-154)||(25089152-25089255)
chr6 (78-154)||(28752242-28752318)
[»] chr8 (15 HSPs)
chr8 (21-157)||(12106864-12107000)
chr8 (1-157)||(21124485-21124641)
chr8 (30-157)||(23976087-23976215)
chr8 (22-154)||(25149238-25149370)
chr8 (1-157)||(18324123-18324279)
chr8 (4-157)||(4288919-4289075)
chr8 (24-157)||(23625119-23625252)
chr8 (45-157)||(22469430-22469542)
chr8 (51-154)||(35202598-35202701)
chr8 (21-157)||(21185808-21185944)
chr8 (21-121)||(35202745-35202845)
chr8 (82-144)||(37494325-37494387)
chr8 (78-155)||(21184298-21184375)
chr8 (79-155)||(37543996-37544072)
chr8 (84-157)||(12107044-12107117)
[»] chr2 (6 HSPs)
chr2 (1-157)||(32092756-32092912)
chr2 (21-157)||(24006877-24007013)
chr2 (1-137)||(31499368-31499503)
chr2 (23-157)||(22093008-22093142)
chr2 (1-94)||(39598567-39598660)
chr2 (78-154)||(39598710-39598786)
[»] chr7 (17 HSPs)
chr7 (1-157)||(27508702-27508858)
chr7 (21-152)||(5080111-5080242)
chr7 (1-156)||(14197457-14197612)
chr7 (1-160)||(15000772-15000931)
chr7 (44-157)||(15272320-15272433)
chr7 (1-157)||(36150942-36151098)
chr7 (35-154)||(3404616-3404735)
chr7 (1-109)||(6441390-6441497)
chr7 (82-155)||(45012848-45012921)
chr7 (77-157)||(38760991-38761070)
chr7 (51-154)||(27508577-27508679)
chr7 (1-160)||(43257258-43257417)
chr7 (76-155)||(45013072-45013151)
chr7 (79-155)||(5080313-5080389)
chr7 (78-154)||(38761195-38761271)
chr7 (84-154)||(36150848-36150918)
chr7 (51-119)||(43257408-43257476)
[»] scaffold0011 (1 HSPs)
scaffold0011 (45-157)||(190175-190287)
[»] chr4 (25 HSPs)
chr4 (1-157)||(2063272-2063428)
chr4 (1-153)||(5324684-5324836)
chr4 (4-157)||(30470815-30470968)
chr4 (1-157)||(10757567-10757723)
chr4 (1-157)||(10970738-10970894)
chr4 (1-157)||(12140664-12140820)
chr4 (35-155)||(47463813-47463933)
chr4 (78-157)||(22017879-22017958)
chr4 (3-157)||(2634021-2634175)
chr4 (35-157)||(5448356-5448478)
chr4 (1-155)||(11821849-11822007)
chr4 (1-157)||(37694897-37695053)
chr4 (23-154)||(9826780-9826911)
chr4 (79-154)||(55382760-55382835)
chr4 (1-155)||(18830574-18830727)
chr4 (76-156)||(55382576-55382656)
chr4 (38-157)||(3391170-3391294)
chr4 (76-147)||(1387286-1387357)
chr4 (1-156)||(18500724-18500878)
chr4 (36-157)||(2232369-2232490)
chr4 (51-154)||(22018026-22018129)
chr4 (78-156)||(18836278-18836355)
chr4 (1-106)||(10380648-10380748)
chr4 (85-154)||(30378948-30379017)
chr4 (67-119)||(18830766-18830818)
[»] scaffold1300 (2 HSPs)
scaffold1300 (49-154)||(1524-1629)
scaffold1300 (79-165)||(1346-1432)
[»] scaffold0407 (2 HSPs)
scaffold0407 (1-157)||(833-988)
scaffold0407 (1-157)||(7297-7452)
[»] scaffold0102 (1 HSPs)
scaffold0102 (3-156)||(24020-24172)
[»] scaffold0049 (1 HSPs)
scaffold0049 (4-148)||(59711-59855)
[»] scaffold0066 (1 HSPs)
scaffold0066 (77-153)||(15562-15638)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-154)||(127952-128083)
[»] scaffold0047 (1 HSPs)
scaffold0047 (28-157)||(11726-11853)
[»] scaffold0039 (1 HSPs)
scaffold0039 (21-159)||(27484-27622)
[»] scaffold0018 (2 HSPs)
scaffold0018 (78-156)||(72114-72192)
scaffold0018 (78-119)||(71943-71984)
[»] scaffold0026 (1 HSPs)
scaffold0026 (23-154)||(57597-57728)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-94)||(314204-314296)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31912349 - 31912110
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  31912349 tagtcaatttagtcatttactgtagactctgttagtcactttagtccatgaaattgactaacgttgtctacgttaaatgactgttttacaatgtctctgc 31912250  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcctctagaaacattagatctcttctttaataagattaggtttctt 200  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  31912249 attcagggattaaaatgactattcttttcccattcaaggactaaagtgactaattcccctagaaacattatatctcttctttaataagattaggtttctt 31912150  T
Q  201 tttctgaataacaataaaatcgggtttctgcactattcat 240  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  31912149 tttctgaataacaataaaatcgggtttttgcaccattcat 31912110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 21943896 - 21943741
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | |||||| | ||||  ||||||| |||||| ||||||||||||   |||||| || |||| ||||||||||||||||||||    
T  21943896 tagtcaatttagtctttgaatgtagattatgttaatcactttagtccctaaaattgactaacaaagtctacattcaaggtctgttttgcaatttctctgc 21943797  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    ||||||| | |||| ||||||||  |||||||||||||||||||||||||||||||    
T  21943796 attcaggtactaaagtgactactcatttcccattcaaggactaaagtgactaattc 21943741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 30100744 - 30100611
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||   |||| || ||||| |||||||||||||||||||||| |||||||||| |||||    
T  30100744 tgtagactctgtttgtcactttagtccctgaaattgaataaagt---ctacattcaaggattgttttgcaatttctctgcatttagggattaaagtgact 30100648  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    ||| ||||| || | | ||||||||||||||||||||    
T  30100647 actcttttctcacttagggactaaagtgactaattcc 30100611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 17497141 - 17497277
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||| ||  |||||||| ||||||||||||||| |||   |||||| || | ||||| |||||||||||||||||||||||||| ||||||||||    
T  17497141 tgtagactccgtcggtcactttagtccctgaaattgaccaacaaagtctacattcagggactattttgcaatttctctgcattcagggactaaaatgact 17497240  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    |||  |||| |||||| |||||||||||||| |||||    
T  17497241 actcatttctcattcacggactaaagtgactcattcc 17497277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 19491820 - 19491951
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||| ||| | || |||||||    
T  19491820 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaaggacttaagtgactac 19491919  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | ||||| |||||| | |||||||||||||||    
T  19491920 tcttttctcattcaggaactaaagtgactaat 19491951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 21211536 - 21211419
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| || |||||||||||| |||   |||||| || |  |||||||||||||||| |||||||||||||| |||| ||||||||  |||||||||    
T  21211536 gtcactttagttcctgaaattgaccaacaaagtctacattcagagactgttttgcaatttttctgcattcagggactaaagtgactactcatttcccatt 21211437  T
Q  135 caaggactaaagtgacta 152  Q
    || |||||||||||||||    
T  21211436 cagggactaaagtgacta 21211419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 20430010 - 20429878
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    |||| |||||||| |||||||| |||| |||||||||| |||   |||||| || || |||||||||||||||||||||||| ||| |  ||||  ||||    
T  20430010 tgtaaactctgttcgtcactttagtccttgaaattgaccaacagagtctacattcaaagactgttttgcaatttctctgcatccagaggctaaagcgact 20429911  T
Q  121 actattttcccattcaaggactaaagtgactaa 153  Q
    |||  |||| |||||| ||||||||||||||||    
T  20429910 actcctttcacattcagggactaaagtgactaa 20429878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 2555586 - 2555721
Alignment:
Q  22 gtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgacta 121  Q
    |||||||  ||| ||||||||  |||||||||||||| ||||  |||||| || | ||||||||||||||||| |||||||| || || |||| | ||||    
T  2555586 gtagacttcgttagtcactttaatccctgaaattgaccaacgcagtctacattcagggactgttttgcaatttttctgcatttagagactaaagtaacta 2555685  T
Q  122 ctattttcccattcaaggactaaagtgactaattcc 157  Q
     |  ||||||||||| ||||||| ||||||||||||    
T  2555686 attatttcccattcagggactaacgtgactaattcc 2555721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 13753348 - 13753226
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| ||||||||||||||| |||   ||||||  | |   ||||||||||||||||||||||||||  || |||| ||||||||  ||| | |||    
T  13753348 gtcactttagtccctgaaattgaccaacagagtctacactcagatactgttttgcaatttctctgcattcaatgactaaagtgactactcattttctatt 13753249  T
Q  135 caaggactaaagtgactaattcc 157  Q
     | ||||||||||||||||||||    
T  13753248 tagggactaaagtgactaattcc 13753226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 13753432 - 13753508
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||| ||||||||||| ||||||||||| || ||||||||| |||  ||||| ||| | |||||||||||||||||    
T  13753432 ggactattttgcaatttatctgcattcagagactaaaatgacgacttctttcctatttagggactaaagtgactaat 13753508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34419606 - 34419663
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgac 58  Q
    |||||||||||||| || | ||||||||||||| |||| ||| |||||||||||||||    
T  34419606 tagtcaatttagtccttaaatgtagactctgttggtcattttagtccctgaaattgac 34419663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10760160 - 10760005
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| |||  ||| ||| |||| |||||||||| |||   || ||| || | |||||||||| |||||||||| |    
T  10760160 tagtcaatttagtccctgaatgtagactccgttaatca-tttagtccttgaaattgaccaacaaagtttacattcagggactgtttttcaatttctctac 10760062  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||| | |||| || |||||  ||| ||| ||| |||| |||||||||||||||    
T  10760061 attcaggaactaaagtggctactcattttccactcagggaccaaagtgactaattcc 10760005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 34419676 - 34419731
Alignment:
Q  100 cattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    |||||||||| |||| ||||||||  |||| |||||||||| ||||||||||||||    
T  34419676 cattcagggactaaagtgactactcctttctcattcaaggattaaagtgactaatt 34419731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 30852644 - 30852586
Alignment:
Q  96 tctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    |||| ||||||||| |||| |||| |||  ||||| |||||||||||||||||||||||    
T  30852644 tctgtattcagggactaaagtgacgacttatttcctattcaaggactaaagtgactaat 30852586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 43548948 - 43549053
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    |||||||| ||| | |||||| || | | |||||||||||||||||||||| ||| ||| |||| |||||| |   ||  ||||||  ||||||||||||    
T  43548948 aaattgaccaacatagtctacattcatgtactgttttgcaatttctctgcaatcaaggactaaagtgactatttccttttcattcagagactaaagtgac 43549047  T
Q  151 taattc 156  Q
    ||||||    
T  43549048 taattc 43549053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 37608098 - 37608249
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | ||||||||| ||| |||||||||||||||||||||||| |||  | | ||| || | |||||||||||||||||||||||    
T  37608098 tagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacagttt-tacattcagggactgttttgcaatttctctgc 37608196  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaa 153  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  37608197 attcagggactaaaatgactactcctttcccattcaaggactaaagtgactaa 37608249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 50335569 - 50335723
Alignment:
Q  3 gtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcat 102  Q
    ||||||||||||  | | ||||||||| | |  ||||||| |||||| |||||||| |||   |||||| || | ||||||||||||||||| |||||||    
T  50335569 gtcaatttagtccctgaatgtagactccgctaatcactttagtccctaaaattgaccaacagagtctacattcagggactgttttgcaatttgtctgcat 50335668  T
Q  103 tcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||||||||| |||||||| |||| ||||||  ||||||||||||||||||||    
T  50335669 tcagggattaaagtgactactttttttccattctgggactaaagtgactaattcc 50335723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 42847192 - 42847300
Alignment:
Q  49 tgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtg 148  Q
    ||||| ||||||||   |||||| || ||||| |||||||||||||||||||||||||||| |||| |||||||| |||||| || ||  ||||||||||    
T  42847192 tgaaactgactaacaaagtctacattcaaggattgttttgcaatttctctgcattcagggaataaagtgactacttttttcctatccagagactaaagtg 42847291  T
Q  149 actaattcc 157  Q
    |||||||||    
T  42847292 actaattcc 42847300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13735571 - 13735723
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattga-ctaacgttgtctacgttaaaggactgttttgcaatttctctg 99  Q
    ||||||||||||||| | | ||||||||| ||| |||||||| |||||||||||||| | |||   |||||| || | ||||||||||||||||||| ||    
T  13735571 tagtcaatttagtcaataaatgtagactccgttagtcactttagtccctgaaattgatcaaacagagtctacattcagggactgttttgcaatttctttg 13735670  T
Q  100 cattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||||| || | |||||||||||  |||||||||  | ||||||||||||||||    
T  13735671 cattcagagact-aaatgactactcctttcccatt-tatgactaaagtgactaat 13735723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8097848 - 8097714
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||||||| |||| ||| |||| | |||||||| ||| | |||||  || |  ||||||||||||||||||||||||| ||  | |||| || ||    
T  8097848 tgtagactctgttagtcattttagtccttaaaattgaccaacatagtctatatttagagactgttttgcaatttctctgcatttagaaactaaagtggct 8097749  T
Q  121 actattttcccattcaaggactaaagtgactaatt 155  Q
    |||| |||| ||||||  |||||||||||||||||    
T  8097748 actaatttctcattcagagactaaagtgactaatt 8097714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 32374090 - 32373983
Alignment:
Q  49 tgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtg 148  Q
    ||||||||||||||   |||||| || ||| |||||||||||| |||| ||||| |||||| |||| ||||||||  ||||| ||||| |||||||| ||    
T  32374090 tgaaattgactaacacagtctacattcaagaactgttttgcaaattctatgcatccagggactaaagtgactact-ctttcctattcagggactaaaatg 32373992  T
Q  149 actaattcc 157  Q
    |||||||||    
T  32373991 actaattcc 32373983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 50335544 - 50335441
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| ||||||||||| |||||||||||||| |||| |||| |||  ||||| ||||| ||| |||||||||    
T  50335544 aaattgactaacaaagtctacattcatggactattttgcaatttatctgcattcagggactaaagtgacgactcatttcctattcagggattaaagtgac 50335445  T
Q  151 taat 154  Q
    ||||    
T  50335444 taat 50335441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 37608075 - 37607982
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaa 144  Q
    ||||||||||||   |||||| || ||||||| ||||||||||| | |||||||||||| ||||||||| | |  ||||| ||||| |||||||    
T  37608075 aaattgactaacagagtctacattcaaggactattttgcaatttatatgcattcagggactaaaatgacaattcatttcctattcagggactaa 37607982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 11633276 - 11633401
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    |||||| | |||| |||||||| |||| |||||||||| ||    |||| | || | |||||||| | |||||||||| |||||||| | ||||||||||    
T  11633276 tgtagattatgttagtcactttagtccttgaaattgaccaatagagtctgcatttagggactgttatacaatttctctacattcaggaactaaaatgact 11633375  T
Q  121 actattttcccattcaaggactaaag 146  Q
    |||  ||| ||||||| |||| ||||    
T  11633376 actcattttccattcagggacaaaag 11633401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 26498701 - 26498547
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||| | | || | |||| ||| |||||||| ||||||||||||||| ||| | |||||| || | |||||||||||||||||||||||    
T  26498701 tagtcaatttagtcactgaatgcatactccgttagtcactttagtccctgaaattgaccaacatggtctacattcagggactgttttgcaatttctctgc 26498602  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    ||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||    
T  26498601 attcagggactaaagtgactactcttttcccattcagggactaaagtgactaatt 26498547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 15031346 - 15031502
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||| | | ||||||||| ||| |||||||| ||||||||||||||| |||   |||||  || | |||||||||||||||||||||||    
T  15031346 tagtcaatttagtcactgaatgtagactccgttagtcactttagtccctgaaattgaccaacaaagtctagatttagggactgttttgcaatttctctgc 15031445  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||| || |||| ||||||||  ||||||||||| ||||||||||||||||||||    
T  15031446 attcagagactaaagtgactactcatttcccattcagggactaaagtgactaattcc 15031502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 20759075 - 20759212
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    |||||| |||| |||||||| |||||||||||||||||||   |||||| || ||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  20759075 tagactatgttagtcactttagtccctgaaattgactaacaaagtctacattcaaggactattttgcaatttctctgcattcaaggactaaaatgactac 20759174  T
Q  123 tattttcccattcaaggactaaagtgactaattcctct 160  Q
    |  |||| |||||| ||||||||  |||||||||||||    
T  20759175 tcctttctcattcagggactaaaacgactaattcctct 20759212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 38498229 - 38498385
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||||||||| || |||||||| |||||| ||||| ||||||   |||||| || |  |||| ||||||||||||| |||    
T  38498229 tagtcaatttagtccctgaatgtagactctattagtcactttagtccctaaaattaactaacaaagtctacattcagagactattttgcaatttctatgc 38498328  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||  |||| |||||| ||| ||||||||||||||||    
T  38498329 attcagggactaaagtgactactcctttctcattcagggattaaagtgactaattcc 38498385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 11989195 - 11989045
Alignment:
Q  4 tcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcatt 103  Q
    ||||||||||| || | ||||||||| ||| | |||||| ||| ||||||||||| |||   |||||  || | ||||||||||||||||||||||||||    
T  11989195 tcaatttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacagagtctatattcagggactgttttgcaatttctctgcatt 11989096  T
Q  104 cagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||| || |||| ||||||||  |||||| |||| |||| ||||||||||||    
T  11989095 cagagactaaagtgactacttctttccctttcagggacaaaagtgactaat 11989045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 14434773 - 14434641
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||| | | |||||||| |||||||||||| ||||||   |||||| || ||||||||||||||||| |||||||||| | ||| |||| |||||    
T  14434773 tgtagactccgctagtcactttagtccctgaaattaactaacaaagtctacattcaaggactgttttgcaatatctctgcatttacggactaaagtgact 14434674  T
Q  121 actattttcccattcaaggactaaagtgactaa 153  Q
    | |  ||||||||||| ||| ||||||||||||    
T  14434673 attcatttcccattcatggattaaagtgactaa 14434641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 21514870 - 21515026
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | ||| ||||||||| || |||||  ||| |||||||||| ||  | |||||| || | ||||||||||| ||||| ||| |    
T  21514870 tagtcaatttagtccttgaatgtggactctgttagttactttaatccatgaaattgaccaatatagtctacattcagggactgttttgaaatttatctac 21514969  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||| ||| |||||||||||||  ||||| ||||| |||| |||||||||||||||    
T  21514970 attcaaggactaaaatgactactcatttccaattcagggacaaaagtgactaattcc 21515026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 33343205 - 33343286
Alignment:
Q  76 aaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||||||||||||||||||||||||||||  | ||||||| |||||  ||||||||||| ||| ||||||||||||||||    
T  33343205 aaggactgttttgcaatttctctgcattcagtaactaaaatgtctactcatttcccattcagggattaaagtgactaattcc 33343286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 18445536 - 18445405
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||| | | | || |||||||    
T  18445536 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaagtacttaagtgactac 18445437  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | |||||  ||||| | |||||||||||||||    
T  18445436 tcttttctgattcaggaactaaagtgactaat 18445405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 41985036 - 41984905
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||| | | | || |||||||    
T  41985036 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaagtacttaagtgactac 41984937  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | |||||  ||||| | |||||||||||||||    
T  41984936 tcttttcttattcaggaactaaagtgactaat 41984905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 48755453 - 48755574
Alignment:
Q  1 tagtcaatttagtcatttactgtagactc-tgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctg 99  Q
    ||||||||||||||  | | ||||||||| |||| |||||||||  ||||||||||||| |||   |||||| || | | ||||||||||||||||||||    
T  48755453 tagtcaatttagtccatgaatgtagactcgtgttagtcactttgacccctgaaattgaccaacagagtctacattcaggaactgttttgcaatttctctg 48755552  T
Q  100 cattcagggattaaaatgacta 121  Q
    |||||||||| |||| ||||||    
T  48755553 cattcagggactaaagtgacta 48755574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 15031291 - 15031188
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| |||| |||||| |||||||||| ||| |||| |||| ||| |||||||||||||||||||||||| |    
T  15031291 aaattgactaacagagtctacattcagggactattttacaatttatctgcattcaaggactaaagtgacgactcttttcccattcaaggactaaagtggc 15031192  T
Q  151 taat 154  Q
    ||||    
T  15031191 taat 15031188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 1426679 - 1426721
Alignment:
Q  79 gactgttttgcaatttctctgcattcagggattaaaatgacta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1426679 gactgttttgcaatttctctgcattcagggattaaaatgacta 1426721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 44967981 - 44968087
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | |||||||||| || ||||||||  |||||||||||||| |||   |||||| || | ||||||||||||||||| ||| |    
T  44967981 tagtcaatttagtctttgaatgtagactctcttagtcactttaatccctgaaattgaccaacaaagtctacatttagggactgttttgcaatttatctac 44968080  T
Q  101 attcagg 107  Q
    |||||||    
T  44968081 attcagg 44968087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 15005163 - 15005240
Alignment:
Q  80 actgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||||||||||||||||||||| || |||| |||| | |  || |||||||||||| ||||||||||||||||    
T  15005163 actgttttgcaatttctctgcattcagagactaaagtgaccagtcattacccattcaaggattaaagtgactaattcc 15005240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 43562689 - 43562593
Alignment:
Q  76 aaggactgttttgcaatttctctgcattcagggattaaaatgac--tactattttcccattcaaggactaaagtgactaattcctctagaaacatta 170  Q
    ||||||||||||||||||||||||||||||  ||  ||| ||||  |||| ||||||||||||  ||||||||||||||||||| ||| ||| ||||    
T  43562689 aaggactgttttgcaatttctctgcattcaatgaccaaattgacattactcttttcccattcagagactaaagtgactaattcccctaaaaaaatta 43562593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 26498692 - 26498795
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| ||||||||||| |||||||||||||| |||| |||  |||  ||||| |||||  ||||||||||||    
T  26498692 aaattgactaaccgagtctacattcatggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagagactaaagtgac 26498791  T
Q  151 taat 154  Q
    ||||    
T  26498792 taat 26498795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 48755430 - 48755327
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| |||||||| || ||||||||||| || |||| |||| |||  ||||| ||||| |||||||||||||    
T  48755430 aaattgactaacagagtctacattcagggactattttgcaacttatctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtgac 48755331  T
Q  151 taat 154  Q
    ||||    
T  48755330 taat 48755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 33343108 - 33343006
Alignment:
Q  52 aattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgact 151  Q
    ||||||||||| | |||||| || | ||||  ||| ||||||| |||||||||||||| |||| |||| |||  ||| | ||||| ||||||||||||||    
T  33343108 aattgactaacatagtctacattcagggaccatttagcaatttatctgcattcagggactaaagtgacgactcattttctattcagggactaaagtgact 33343009  T
Q  152 aat 154  Q
    |||    
T  33343008 aat 33343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 39541765 - 39541858
Alignment:
Q  30 tgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactact 123  Q
    |||| |||||||| |||| | |||||||| |||   |||||| || |  ||||||||| ||||||||||||||||||||| |||| ||||||||    
T  39541765 tgttagtcacttttgtccttaaaattgaccaacagagtctacattcagagactgttttacaatttctctgcattcagggactaaagtgactact 39541858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 26920281 - 26920435
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | ||||| |||  || ||||||||  |||||||||||||  |||   || ||| || ||| ||||||||||||||| |||||    
T  26920281 tagtcaatttagtccttaaatgtaggctccattagtcactttaatccctgaaattgatcaacaaagtatacattcaagaactgttttgcaatttttctgc 26920380  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    |||||  || |||| | ||||||| ||| | ||||| | | |||||| |||||||    
T  26920381 attcatagactaaagtaactactacttttctattcaggaattaaagtcactaatt 26920435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 21514832 - 21514744
Alignment:
Q  66 gtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    |||||| || ||||||| |||| |||||| |||| ||||||||| |||| |||| |||  |||   |||||| ||||||||||||||||    
T  21514832 gtctacattcaaggactattttacaatttatctgtattcagggactaaagtgacgacttcttttatattcaaagactaaagtgactaat 21514744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19295434 - 19295278
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| ||||||||||||||||||| | | |||  || | |||||||||||||||||||| ||    
T  19295434 tagtcaatttagtccctgaatgtagactccgttggtcactttagtccctgaaattgactaacatagcctatatttagggactgttttgcaatttctcagc 19295335  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||  ||||| ||||||||||||||||||||||||||    
T  19295334 attcagggactaaagtgactactcctttcctattcaaggactaaagtgactaattcc 19295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 10588006 - 10587884
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| ||||||||||||||  ||| | |||||| || | |||||||||||||||||||||||||||||||| |||| ||||||||  |||| ||||    
T  10588006 gtcactttagtccctgaaattgaacaacatagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgactactcctttctcatt 10587907  T
Q  135 caaggactaaagtgactaattcc 157  Q
    || ||||||||||||||||||||    
T  10587906 catggactaaagtgactaattcc 10587884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 13536707 - 13536843
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||||||| |||||||| ||||||||||| ||| ||    |||||| || | |||||||||||||||||||||| |||||| || |||| |||||    
T  13536707 tgtagactctgttagtcactttagtccctgaaatggaccaatagagtctacattcagggactgttttgcaatttctctgtattcagagactaaagtgact 13536806  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    |||  |||| |||||||||||||||||||||||||||    
T  13536807 actcctttctcattcaaggactaaagtgactaattcc 13536843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 21222618 - 21222462
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| |||||||||||||||||||||||||    
T  21222618 tagtcaatttagtccctgaatgtagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaaggactgttttgcaatttctctgc 21222519  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||| ||| | || |||||||| ||||| |||||| | |||||||| |||||||||    
T  21222518 attcaaggacttaagtgactactcttttctcattcaggaactaaagttactaattcc 21222462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26705154 - 26705310
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||  | ||| |||||||| ||||||||||||||| |||   |||||| || | ||||||||||||||||||||| |    
T  26705154 tagtcaatttagtccctgaatgtagaacccgttagtcactttagtccctgaaattgaccaacaacgtctacattcagggactgttttgcaatttctctac 26705253  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| |||||||| |||| ||||||| | ||||||||||||||||||    
T  26705254 attcagggactaaagtgactactctttttccattcaggaactaaagtgactaattcc 26705310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 25089278 - 25089434
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||   || |||||||| |||| |||||||||| ||| | |||||  || | | |||||||||||||||||||||    
T  25089278 tagtcaatttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaacatagtctatattcaggaactgttttgcaatttctctgc 25089377  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||| || |||| |||||| |  ||  ||||||| ||||||||||||||||||||    
T  25089378 attcagtgactaaagtgactattcattgtccattcagggactaaagtgactaattcc 25089434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 13536663 - 13536560
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| ||||||||||| |||||||||||| |||||| ||||  ||  ||||| ||||| |||||||||||||    
T  13536663 aaattgactaacagagtctacattcagggactattttgcaatttatctgcattcaggcattaaagtgacggctcctttcctattcagggactaaagtgac 13536564  T
Q  151 taat 154  Q
    ||||    
T  13536563 taat 13536560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10862139 - 10862251
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | | ||||||||||| |||||||| ||||||||||||||| ||    |||||| || |   |||||||||||||||||||||    
T  10862139 tagtcaatttagtccctgaatatagactctgttcgtcactttagtccctgaaattgaccaataa-gtctacattcagctactgttttgcaatttctctgc 10862237  T
Q  101 attcagggattaaa 114  Q
    ||||||||| ||||    
T  10862238 attcagggactaaa 10862251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 10588074 - 10588150
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||| ||||||||||| |||||||||| ||| | || |||| |||  ||||| ||||| |||||||||||||||||    
T  10588074 ggactattttgcaatttatctgcattcatggacttaagtgacaactcctttcctattcagggactaaagtgactaat 10588150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 25089255 - 25089152
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    ||||||||||||   |||||| || | ||||| ||||||||||| ||||||||||| || |||| || | |||  | ||| ||||| |||||||||||||    
T  25089255 aaattgactaacagagtctacattcagggactattttgcaatttatctgcattcagagactaaagtggcgactcctctcctattcatggactaaagtgac 25089156  T
Q  151 taat 154  Q
    ||||    
T  25089155 taat 25089152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 28752318 - 28752242
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||| ||||||||||| |||||||||||| | |||| ||||  ||  ||||   ||||||||||||||||||||||    
T  28752318 ggactattttgcaatttatctgcattcaggtactaaagtgacatcttctttcttgttcaaggactaaagtgactaat 28752242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 12107000 - 12106864
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||  ||| |||||||| ||||||||||||||| |||   |||||| |  | |||||||||||||||||||||||||||||||| |||| |||||    
T  12107000 tgtagactgcgttcgtcactttagtccctgaaattgaccaacagagtctacatccagggactgttttgcaatttctctgcattcagggactaaagtgact 12106901  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    |||  ||||||||||| ||||||||||||||||||||    
T  12106900 actcatttcccattcagggactaaagtgactaattcc 12106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 21124485 - 21124641
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||   || ||||||||| ||| | |||||| |||| | |||||||| |||   |||||| || ||||||||||||||||||||||| |    
T  21124485 tagtcaatttagtcccctagtgtagactccgttagccactttagtccataaaattgaccaacagagtctacattcaaggactgttttgcaatttctctac 21124584  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||| |||||| ||||||||  |||| |||||||| ||||||||||||||||||    
T  21124585 attcaggaattaaagtgactactcctttctcattcaagaactaaagtgactaattcc 21124641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 23976215 - 23976087
Alignment:
Q  30 tgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac-tatttt 128  Q
    |||| ||||||||  ||||||||||||||||||   |||||| || | |||||||||||||||||||||||||||||| | |||| ||||||| | ||||    
T  23976215 tgttagtcactttactccctgaaattgactaacagagtctacattcagggactgttttgcaatttctctgcattcaggaactaaagtgactacttctttt 23976116  T
Q  129 cccattcaaggactaaagtgactaattcc 157  Q
     ||||||||||||||||||||||||||||    
T  23976115 tccattcaaggactaaagtgactaattcc 23976087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25149370 - 25149238
Alignment:
Q  22 gtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgacta 121  Q
    |||||| | ||| |||||||| |||| |||||||||| |||   |||||| || | ||||||||||||||||||| ||||||||||||||||| ||||||    
T  25149370 gtagacaccgttcgtcactttagtccttgaaattgaccaacagagtctacattcagggactgttttgcaatttctttgcattcagggattaaagtgacta 25149271  T
Q  122 ctattttcccattcaaggactaaagtgactaat 154  Q
    || |||| ||||||| |||||||| ||||||||    
T  25149270 ctctttttccattcagggactaaaatgactaat 25149238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 18324123 - 18324279
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | ||||||||| ||| |||||||| || | |||||||||| | |   ||| || || | |||||||||||||||||||||||    
T  18324123 tagtcaatttagtccttaaatgtagactccgttagtcactttagttcatgaaattgaccagcagagtcgacattcatggactgttttgcaatttctctgc 18324222  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| ||||||||||||   |||| |||||| ||| |||| ||| |||||||    
T  18324223 attcagggactaaaatgactacgtctttctcattcagggattaaaatgattaattcc 18324279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 4289075 - 4288919
Alignment:
Q  4 tcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgtt-----gtctacgttaaaggactgttttgcaatttctct 98  Q
    ||||||||||| || | ||||||||||||| ||||||||  |||||||||||||||||  ||     |||||| ||  |||| |||||||||||||||||    
T  4289075 tcaatttagtctttgaatgtagactctgttagtcactttaatccctgaaattgactaa--ttaaagagtctacattcgaggaatgttttgcaatttctct 4288978  T
Q  99 gcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
     |||||| | | |||| |||||||| |||| ||| ||| |||||||| |||||||||||    
T  4288977 acattcatgaactaaagtgactactttttttccaatcagggactaaaatgactaattcc 4288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 23625119 - 23625252
Alignment:
Q  24 agactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactact 123  Q
    |||||||||| |||| ||| ||||||||||||||  ||||  |||||| || | | | |||||| |||||||||||||  ||  ||||||| ||||||||    
T  23625119 agactctgttggtcaatttagtccctgaaattgatcaacgcagtctacattcaggaagtgttttacaatttctctgcacccaaagattaaagtgactact 23625218  T
Q  124 attttcccattcaaggactaaagtgactaattcc 157  Q
     |||||| |||||  |||||||||||||||||||    
T  23625219 tttttcctattcagagactaaagtgactaattcc 23625252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 22469542 - 22469430
Alignment:
Q  45 tccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaa 144  Q
    |||||||||||||| |||   |||| | || | ||||||||||||||||||||| |||||||| |  ||| || |||||  ||||||||||| ||| |||    
T  22469542 tccctgaaattgaccaacagagtctgcattcagggactgttttgcaatttctctacattcaggaacgaaagtggctactcctttcccattcagggattaa 22469443  T
Q  145 agtgactaattcc 157  Q
    |||||||||||||    
T  22469442 agtgactaattcc 22469430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 35202701 - 35202598
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    |||||||||||| | |||||| || ||||||  ||||||||||| | |||||||||||| ||||||||  |||  ||||| |||||| ||||||| ||||    
T  35202701 aaattgactaacatagtctacatttaaggaccattttgcaatttatttgcattcagggactaaaatgataacttctttcctattcaatgactaaaatgac 35202602  T
Q  151 taat 154  Q
    ||||    
T  35202601 taat 35202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 21185808 - 21185944
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    |||| |||| ||| |||||||| |||| |||||||||| |||   |||||  || | |||  ||||| |||||| || ||||||||||| |||| |||||    
T  21185808 tgtacactcagttagtcactttagtccatgaaattgaccaacagagtctatatttagggaacgtttttcaatttttcagcattcagggactaaagtgact 21185907  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    |||  |||| ||||||  |||||||||||||||||||    
T  21185908 actcatttctcattcagcgactaaagtgactaattcc 21185944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 35202745 - 35202845
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||| ||| |||||||| || |||||||||||| |||   ||  || || | |||||||||||||||||||||||||||||| | |||| |||||    
T  35202745 tgtagactccgttagtcactttagttcctgaaattgaccaacagagtaaacattcagggactgttttgcaatttctctgcattcaggaactaaagtgact 35202844  T
Q  121 a 121  Q
    |    
T  35202845 a 35202845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 37494387 - 37494325
Alignment:
Q  82 tgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaa 144  Q
    |||||| ||||||||||||||||||||| |||| ||||||||  ||||| ||||| |||||||    
T  37494387 tgttttacaatttctctgcattcagggactaaagtgactacttatttcctattcagggactaa 37494325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 21184375 - 21184298
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    ||||| ||||||||||| ||||||||| |||| || | |||| |||  ||||| ||||| ||||||||||||||||||    
T  21184375 ggactattttgcaatttatctgcattcggggactagagtgacgactcatttcctattcagggactaaagtgactaatt 21184298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 37543996 - 37544072
Alignment:
Q  79 gactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    |||| ||||||||||| ||| |||||||||| ||||||| | |||  ||||  ||||| ||||||||||||||||||    
T  37543996 gactattttgcaatttatctacattcagggactaaaatggcgacttctttcatattcagggactaaagtgactaatt 37544072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 12107044 - 12107117
Alignment:
Q  84 ttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||||| |||||||||| ||| |||| |||| |||  ||||| ||| |  |||||||||||||||||||    
T  12107044 ttttgcaatttatctgcattcaaggactaaagtgacgacttctttcctatttagagactaaagtgactaattcc 12107117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 32092912 - 32092756
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||  ||| |||||||| || ||||| |||||| |||   |||||| || | |||||||||||||||||||||||    
T  32092912 tagtcaatttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagtctacattcagggactgttttgcaatttctctgc 32092813  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||  ||||||||||| ||||||||||||||||||||    
T  32092812 attcagggactaaagtgactactcatttcccattcagggactaaagtgactaattcc 32092756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 24007013 - 24006877
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    |||||||||||||  ||| ||| ||| |||||||||| ||||   |||||| || | |||||||||||||||||||||||||||||||| |||| |||||    
T  24007013 tgtagactctgttaatcattttagtctctgaaattgagtaacagagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgact 24006914  T
Q  121 actattttcccattcaaggactaaagtgactaattcc 157  Q
    | | ||||||||||||   || ||||||||| |||||    
T  24006913 aattttttcccattcagaaaccaaagtgactgattcc 24006877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31499503 - 31499368
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | |||||||| | ||||||||||||||||||||||||||| |||    ||||| ||||| |||||||||||||||||||||     
T  31499503 tagtcaatttagtccttgaatgtagactttatttgtcactttggtccctgaaattgaccaacaaaatctacattaaa-gactgttttgcaatttctctgt 31499405  T
Q  101 attcagggattaaaatgactactattttcccattcaa 137  Q
    ||| | | |||||| ||||||||  ||||||| ||||    
T  31499404 atttaagaattaaagtgactacttctttcccactcaa 31499368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 22093008 - 22093142
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| |||||||||||| ||||||||| ||||| |||    ||||| || |  |||||||||||||||||||| |||||||||| |||| | ||||     
T  22093008 tagactccgtttgtcactttagtccctgaatttgaccaacagaatctacattcagagactgttttgcaatttctctacattcagggactaaagtaactaa 22093107  T
Q  123 tattttcccattcaaggactaaagtgactaattcc 157  Q
    |  ||| ||||||| | |||||||||| |||||||    
T  22093108 tcattttccattcaggaactaaagtgattaattcc 22093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39598660 - 39598567
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaattt 94  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| |||||| ||||||||||||   |||||| || ||| ||||||||| |||||    
T  39598660 tagtcaatttagtccctgaatgtagactccgttagtcactttagtccctaaaattgactaacaaagtctacattcaagaactgttttgtaattt 39598567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 39598710 - 39598786
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||| ||||||||||| ||||||||||| || ||||||||  | |  ||||| ||| | |||||||||||||||||    
T  39598710 ggactattttgcaatttatctgcattcagtgactaaaatgaaaatttctttcctattgagggactaaagtgactaat 39598786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 27508702 - 27508858
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| |||| ||||||||||||||   |||||| || | ||||||||||||||||||||| |    
T  27508702 tagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacagagtctacattcagggactgttttgcaatttctctac 27508801  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
     |||||||| |||| ||||||||  ||| ||||||| ||| ||||||||||||||||    
T  27508802 gttcagggactaaagtgactactccttttccattcagggattaaagtgactaattcc 27508858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 5080242 - 5080111
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||| |||  ||| ||| |||| ||||||||||||||   |||||| || || |||||||||||| |||||||||||||||| | |||| |||||    
T  5080242 tgtagactccgttaatcattttagtccttgaaattgactaacagagtctacattcaaagactgttttgcattttctctgcattcaggaactaaagtgact 5080143  T
Q  121 actattttcccattcaaggactaaagtgacta 152  Q
    ||| |||||||||||| |||||||||||||||    
T  5080142 acttttttcccattcagggactaaagtgacta 5080111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 14197612 - 14197457
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| ||||||||||||||| |||    ||||| ||  | ||||||||||||||||||||||    
T  14197612 tagtcaatttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacagaatctacattcgatgactgttttgcaatttctctgc 14197513  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    ||| ||||| |||| |||||||| |||||||||| | | |||||||||| ||||||    
T  14197512 atttagggactaaagtgactacttttttcccattgaggaactaaagtgattaattc 14197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 15000772 - 15000931
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  ||| ||||||||| ||| | |||||| ||||||||||||||| ||    |||||| || | |||||||||||||||| ||||||    
T  15000772 tagtcaatttagtcccttaatgtagactccgttggacactttagtccctgaaattgaccaataaagtctacatttagggactgttttgcaattcctctgc 15000871  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcctct 160  Q
    || ||  || |||| ||||||||  ||||||||||| ||||||||||| |||||||||||    
T  15000872 atccaaagactaaagtgactactcatttcccattcagggactaaagtggctaattcctct 15000931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 15272433 - 15272320
Alignment:
Q  44 gtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggacta 143  Q
    ||||||||||||||| |||   |||||| || | ||||| |||||||||||||||||||||||||| |||||||||||||  |||| |||||| ||||||    
T  15272433 gtccctgaaattgaccaacaaagtctacattcagggactattttgcaatttctctgcattcagggactaaaatgactactcatttctcattcacggacta 15272334  T
Q  144 aagtgactaattcc 157  Q
    |||||||| |||||    
T  15272333 aagtgactcattcc 15272320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 36150942 - 36151098
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||| |||| ||| |||| ||| |||| |||||||||| |||   |||||| || | | ||||||||||||||||||  |    
T  36150942 tagtcaatttagtctctgaatgtaaactccgttagtcattttagtccttgaaattgaccaacaaagtctacattcaggtactgttttgcaatttctcaac 36151041  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||| |||||||| ||||||||  ||| |||| || ||||||||||||||||||||    
T  36151042 attcaaggattaaagtgactactcattttccatccagggactaaagtgactaattcc 36151098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 3404616 - 3404735
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| ||  |||| ||||||||||   |||||| || ||||||| |||||||||||||||||||||||||  |||| |||||||| |||| |||||    
T  3404616 gtcactttagtttctgatattgactaaccgagtctacattcaaggactattttgcaatttctctgcattcagggcctaaagtgactactctttttccatt 3404715  T
Q  135 caaggactaaagtgactaat 154  Q
     | | |||||||||||||||    
T  3404716 taggaactaaagtgactaat 3404735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6441497 - 6441390
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| |||| ||||||||||||| |  |||||| || | ||||||||||||||||||| |||    
T  6441497 tagtcaatttagtctctaaatgtagactccgttagtcacttttgtccttgaaattgactaaag-agtctacattcagggactgttttgcaatttctttgc 6441399  T
Q  101 attcaggga 109  Q
    |||||||||    
T  6441398 attcaggga 6441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 45012921 - 45012848
Alignment:
Q  82 tgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    ||||||||||||||| ||||||||| || |||| ||||||||  ||||||||||| |||| |||||||||||||    
T  45012921 tgttttgcaatttctttgcattcagagactaaagtgactactcctttcccattcagggaccaaagtgactaatt 45012848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 38761070 - 38760991
Alignment:
Q  77 aggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||||||||||||||||||| |||||| | | |||| ||||||||  ||||||||||| |||||||| |||||||||||    
T  38761070 aggactgttttgcaatttctctacattcacgaactaaagtgactacttctttcccattcagggactaaa-tgactaattcc 38760991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 27508679 - 27508577
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    |||||||||||| | |||||| || | ||||| ||||||||||| |||||||||||||| |||| |||  |||  ||||| ||||| ||||| |||||||    
T  27508679 aaattgactaacatagtctacattcagggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggact-aagtgac 27508581  T
Q  151 taat 154  Q
    ||||    
T  27508580 taat 27508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 43257417 - 43257258
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||  ||| |||| |||  |||||||||||||| |||    ||||| || |  |||| |||| |||||||| |||    
T  43257417 tagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaacaaaatctacattcagagactcttttacaatttctatgc 43257318  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcctct 160  Q
    ||||||||| |||  |||||| |  ||| ||||||| ||| |||||||||||||||||||    
T  43257317 attcagggactaaggtgactattcattttccattcagggattaaagtgactaattcctct 43257258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 45013072 - 45013151
Alignment:
Q  76 aaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    ||||||| ||||||||||| | |||||||| ||| |||| |||| ||| |||||| ||| | ||||||||||||||||||    
T  45013072 aaggactattttgcaatttatttgcattcaaggactaaactgacgactcttttcctattaagggactaaagtgactaatt 45013151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 5080313 - 5080389
Alignment:
Q  79 gactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    |||| |||| |||||| |||||||||||||| |||||| || |||  ||||| |||||  |||||||||||||||||    
T  5080313 gactattttacaatttatctgcattcagggactaaaataacgacttctttcctattcagagactaaagtgactaatt 5080389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 38761195 - 38761271
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||| ||||||||||| |||||||||||||| |||| |||  |||  ||||| ||||| |||||||||||| ||||    
T  38761195 ggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggactaaagtgattaat 38761271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 36150918 - 36150848
Alignment:
Q  84 ttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||||||||| |||||||||| ||||| || |||| |||  ||||| ||| | |||||||||||||||||    
T  36150918 ttttgcaatttatctgcattcatggatttaagtgacgactcatttcctatttatggactaaagtgactaat 36150848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 43257408 - 43257476
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgac 119  Q
    ||||||||||||   |||||  || ||||| | ||||||||||| ||||||||||||||||||| ||||    
T  43257408 aaattgactaacagagtctatattcaaggattattttgcaatttatctgcattcagggattaaagtgac 43257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 190287 - 190175
Alignment:
Q  45 tccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaa 144  Q
    |||||||||||||| |||   |||||| || |  |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||    
T  190287 tccctgaaattgaccaacagagtctacattcagagactgttttgcaatttctctgcattcagagactaaaatgactactcttttcccattcagggactaa 190188  T
Q  145 agtgactaattcc 157  Q
    | |||||||||||    
T  190187 aatgactaattcc 190175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 2063272 - 2063428
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||||| | |||| |||||||| |||  | |||||||| |||   |||||| || | |||||| ||||||||||||||||    
T  2063272 tagtcaatttagtccctaaatgtagaatttgttagtcactttagtctttaaaattgaccaacagagtctacattcagggactgctttgcaatttctctgc 2063371  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    | ||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  2063372 aatcaaggattaaagtgactactcatttcccattcaaggactaaagtgactaattcc 2063428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5324836 - 5324684
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | |||| |||||||| |||||||| ||||||||||||||| |||   |||||| || || ||||||||||||||||||||||    
T  5324836 tagtcaatttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacagagtctacattcaaagactgttttgcaatttctctgc 5324737  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaa 153  Q
    || ||| |  ||||  |||||||  |||| |||||| ||||||||||||||||    
T  5324736 atccagaggctaaagcgactactcctttcacattcagggactaaagtgactaa 5324684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 30470968 - 30470815
Alignment:
Q  4 tcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcatt 103  Q
    |||||||||||||| | ||||||||||||| |||||||| ||||||||||||||| |||     |||| || | ||| ||||||||||||||||||||||    
T  30470968 tcaatttagtcattgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaatgctacatttagggagtgttttgcaatttctctgcatt 30470869  T
Q  104 cagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||| | |||| ||||||||  |||||| |||| | ||||||| ||| ||||||    
T  30470868 caggaactaaagtgactactcatttcccgttcaggaactaaagagaccaattcc 30470815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10757723 - 10757567
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||||||||||||  ||||| |  ||||||| |||||| ||| | |||||| |  | ||||||||||||||||| ||| |    
T  10757723 tagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaacatagtctacatccatggactgttttgcaatttatctac 10757624  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||  |||| |||||| ||||||||||||||||||||    
T  10757623 attcagggactaaagtgactactcatttctcattcagggactaaagtgactaattcc 10757567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10970894 - 10970738
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||||||||||||  ||||| |  ||||||| |||||| ||| | |||||| |  | ||||||||||||||||| ||| |    
T  10970894 tagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaacatagtctacatccatggactgttttgcaatttatctac 10970795  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||  |||| |||||| ||||||||||||||||||||    
T  10970794 attcagggactaaagtgactactcatttctcattcagggactaaagtgactaattcc 10970738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 12140820 - 12140664
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    |||||||||||||| || | |||||| | |||| |||| ||| |||||| ||||||| ||||   |||||  || | ||||||||||||||||||| |||    
T  12140820 tagtcaatttagtccttgaatgtagaatttgttagtcattttagtccctaaaattgattaacaaagtctatatttagggactgttttgcaatttctttgc 12140721  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||| |||||||| |||| |||  |||| |||| ||||| ||||||||||||||||    
T  12140720 attcaaggattaaagtgacgacttatttctcatttaaggattaaagtgactaattcc 12140664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 47463933 - 47463813
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| |||||||||||| |  |||   |||||| || || |||||||||||||||| |||||||||||||| |||| ||||||||  ||||||||     
T  47463933 gtcactttagtccctgaaatttatcaacagagtctacattcaaagactgttttgcaatttatctgcattcagggactaaagtgactactcatttcccatc 47463834  T
Q  135 caaggactaaagtgactaatt 155  Q
    || ||||||||||||||||||    
T  47463833 cagggactaaagtgactaatt 47463813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 22017958 - 22017879
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||  ||||||||||| ||| |||||||||| |||||    
T  22017958 ggactgttttgcaatttctctgcattcagggactaaagtgactactcctttcccattcagggattaaagtgactgattcc 22017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 2634175 - 2634021
Alignment:
Q  3 gtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcat 102  Q
    ||||||||||||  | | |||||||| ||||  ||||||| ||| ||||||||||| ||    |||||| || | |||||||||||||||||||| ||||    
T  2634175 gtcaatttagtccctgaatgtagactttgttaatcactttagtcgctgaaattgaccaataaagtctacattcagggactgttttgcaatttctcagcat 2634076  T
Q  103 tcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    || | |  |||| |||||||| ||||| |||||| ||||||||||||||||||||    
T  2634075 tcggcggctaaagtgactactcttttctcattcatggactaaagtgactaattcc 2634021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 5448356 - 5448478
Alignment:
Q  35 gtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccatt 134  Q
    |||||||| || |||||||||||| |||   || ||| || | |||||||||||||||||||||||||||||||| |||| |||||| | |||| | |||    
T  5448356 gtcactttagttcctgaaattgaccaacagagtttacattcagggactgttttgcaatttctctgcattcagggactaaagtgactattctttttcgatt 5448455  T
Q  135 caaggactaaagtgactaattcc 157  Q
    || ||| ||||||||||||||||    
T  5448456 cacggagtaaagtgactaattcc 5448478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 11821849 - 11822007
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaa-ag---gactgttttgcaatttct 96  Q
    ||||||||||||||  | | ||||||||||||| |||||||| ||||||||||||||| |||   |||||  || | ||   || |||||||||||||||    
T  11821849 tagtcaatttagtctatgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaagtctaaattcagagattgattgttttgcaatttct 11821948  T
Q  97 ctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    ||||||||||||| |||| | | ||||  ||||||||| |||||||||||| |||||||    
T  11821949 ctgcattcagggactaaagtaagtactcatttcccattgaaggactaaagtaactaatt 11822007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 37695053 - 37694897
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | | |||||||| || |||||||| ||| || |||||||| |||    ||||| || | |||||||||||||||||||||||    
T  37695053 tagtcaatttagtccctgaatatagactctattagtcactttagtcacttaaattgaccaacacaatctacattcagggactgttttgcaatttctctgc 37694954  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||||||   ||| || |||  |||||||||||||||||||    
T  37694953 attcagggactaaagtgactactccattctcactcagtgactaaagtgactaattcc 37694897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 9826780 - 9826911
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||| | | | || |||||||    
T  9826780 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaagtacttaagtgactac 9826879  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | |||||  ||||| | |||||||||||||||    
T  9826880 tcttttctgattcaggaactaaagtgactaat 9826911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 55382760 - 55382835
Alignment:
Q  79 gactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||  ||||| |||||||||||||||||||||||    
T  55382760 gactattttgcaatttatctgcattcagggattaaagtgacgactcatttcctattcaaggactaaagtgactaat 55382835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 18830727 - 18830574
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | |||||||||  || |||||||| ||||||||||||||| |||    ||||| || | ||||||||| ||||||| |||||    
T  18830727 tagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacagaatctacattcagggactgtttagcaatttatctgc 18830628  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaatt 155  Q
    || || ||| |||| ||||||||  |||| |||||| ||||||||||||||||||    
T  18830627 atcca-ggactaaagtgactactcatttctcattcagggactaaagtgactaatt 18830574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 55382656 - 55382576
Alignment:
Q  76 aaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    |||||||| ||||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||| |||||| ||||||||||    
T  55382656 aaggactgctttgcaatttctctgcattcacggactaaagtgactactcattttccattcaagaactaaaatgactaattc 55382576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 3391170 - 3391294
Alignment:
Q  38 actttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattt-----tccca 132  Q
    ||||| |||| ||||||||||||||   |||||| || || || ||||||||||||||||||||||||| || |||| |||||||| |||     |  ||    
T  3391170 actttagtccttgaaattgactaacaaagtctacattcaatgattgttttgcaatttctctgcattcagagactaaagtgactactttttttttctttca 3391269  T
Q  133 ttcaaggactaaagtgactaattcc 157  Q
    |||||| ||||||||||||||||||    
T  3391270 ttcaagaactaaagtgactaattcc 3391294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 1387357 - 1387286
Alignment:
Q  76 aaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagt 147  Q
    |||||||| |||| |||||||||||||||| ||| ||||||||||||| ||||| |||||| |||| |||||    
T  1387357 aaggactgctttgtaatttctctgcattcatggactaaaatgactactcttttctcattcatggaccaaagt 1387286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 18500724 - 18500878
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | | |||||||||||  ||||||| ||| ||||||||||| |||  | ||||| || ||| |||||||| ||||||||||||    
T  18500724 tagtcaatttagtccctgaatttagactctgttaatcactttagtctctgaaattgaccaacagtatctacattcaagaactgttttacaatttctctgc 18500823  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    |  || | |||||||||||||||  |||  || ||| |||| ||||||||||||||    
T  18500824 acccaagaattaaaatgactactcatttttca-tcagggacaaaagtgactaattc 18500878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 2232490 - 2232369
Alignment:
Q  36 tcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattc 135  Q
    ||||||| ||||||||||||||| |||    ||||| || | ||| |||||||||||||||||  ||||||||| |||| ||||||||  |||  ||||     
T  2232490 tcactttagtccctgaaattgaccaacagaatctacattgagggattgttttgcaatttctctctattcagggactaaattgactactcatttttcattt 2232391  T
Q  136 aaggactaaagtgactaattcc 157  Q
    | | ||||||||||||||||||    
T  2232390 aggaactaaagtgactaattcc 2232369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 22018026 - 22018129
Alignment:
Q  51 aaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgac 150  Q
    |||| ||||||| | |||||| || | ||||| ||||||||||| ||||||||||| ||  |||||||| |||  ||||| ||| | |||||||||||||    
T  22018026 aaatagactaacatagtctacattcagggactattttgcaatttatctgcattcagagacgaaaatgacgactcatttcctatttagggactaaagtgac 22018125  T
Q  151 taat 154  Q
    ||||    
T  22018126 taat 22018129  T

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Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 18836355 - 18836278
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    ||||||||||| ||||| |||||||||||||| |||| ||||||||  |||| |||||| |||| ||| ||||||||||    
T  18836355 ggactgttttg-aatttatctgcattcagggactaaagtgactactcatttctcattcagggacaaaaatgactaattc 18836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10380748 - 10380648
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||||||  | | ||||||||| ||| |||||||| ||||||||||||||| |||   ||     ||| | ||||||||||||||||||||||    
T  10380748 tagtcaatttagtccctaaatgtagactcagttagtcactttagtccctgaaattgaccaacaaagt-----ttacatgactgttttgcaatttctctgc 10380654  T
Q  101 attcag 106  Q
    ||||||    
T  10380653 attcag 10380648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 30378948 - 30379017
Alignment:
Q  85 tttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaat 154  Q
    ||||||||||||||||||| ||||| |||| ||||||||  ||||| ||| |  ||||||||||||||||    
T  30378948 tttgcaatttctctgcattaagggactaaagtgactactcatttcctatttagagactaaagtgactaat 30379017  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 18830766 - 18830818
Alignment:
Q  67 tctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgac 119  Q
    ||||| || ||||||| ||||||||||| |||||||||||||| |||| ||||    
T  18830766 tctacattcaaggactattttgcaatttatctgcattcagggactaaagtgac 18830818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 1524 - 1629
Alignment:
Q  49 tgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtg 148  Q
    ||||||||||||||   ||||||||| |||||||||||||||||||||||||||||| ||| | || |||||||| ||||| |||||| | |||||||||    
T  1524 tgaaattgactaacagagtctacgttcaaggactgttttgcaatttctctgcattcaaggacttaagtgactactcttttctcattcaggaactaaagtg 1623  T
Q  149 actaat 154  Q
    ||||||    
T  1624 actaat 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 1432 - 1346
Alignment:
Q  79 gactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcctctagaaa 165  Q
    |||| ||||||||||| |||||||| ||||| |||| |||  | |  ||||| ||||||||||||||||||||||||| | ||||||    
T  1432 gactattttgcaatttatctgcatttagggactaaagtgataatttatttcctattcaaggactaaagtgactaattcttttagaaa 1346  T

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Target: scaffold0407 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 988 - 833
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||| ||  | | |||||||| |||| |||||||| ||||||||||||||||||    |||||| ||  ||||||||||||||||||||||||    
T  988 tagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacatt-caggactgttttgcaatttctctgc 890  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||| || |||| |||||||   ||||||||||| ||||||    
T  889 attcagggactaaagtgacttctctttttccattcagaaactaaagtgaccaattcc 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7452 - 7297
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgc 100  Q
    ||||||||||| ||  | | |||||||| |||| |||||||| ||||||||||||||||||    |||||| ||  ||||||||||||||||||||||||    
T  7452 tagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacatt-caggactgttttgcaatttctctgc 7354  T
Q  101 attcagggattaaaatgactactattttcccattcaaggactaaagtgactaattcc 157  Q
    ||||||||| |||| ||||| || |||| |||||||   ||||||||||| ||||||    
T  7353 attcagggactaaagtgacttctctttttccattcagaaactaaagtgaccaattcc 7297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 24020 - 24172
Alignment:
Q  3 gtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcat 102  Q
    |||||||||||| || | |||||||| | || |||||||| |||| |||||||||| |||    ||||| || | ||| |||||||||||||||||||||    
T  24020 gtcaatttagtccttgaatgtagactttattcgtcacttttgtccatgaaattgaccaacagaatctacattcagggattgttttgcaatttctctgcat 24119  T
Q  103 tcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    ||||||| |||||  |||||| |||| ||||||| ||| |||||||||||||||    
T  24120 tcagggactaaaacaactactctttt-ccattcagggattaaagtgactaattc 24172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 59855 - 59711
Alignment:
Q  4 tcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcatt 103  Q
    |||||||||||  | | || |||||| ||| |||| ||| |||||||||||||||||||   |||||| || | || |||||||||||||||||||||||    
T  59855 tcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaaattgactaacagagtctacattcaggggctgttttgcaatttctctgcatt 59756  T
Q  104 cagggattaaaatgactactattttcccattcaaggactaaagtg 148  Q
    |||||| |||| |||||||   ||||||||| | |||||||||||    
T  59755 cagggactaaagtgactacacctttcccattgagggactaaagtg 59711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 15562 - 15638
Alignment:
Q  77 aggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaa 153  Q
    |||||||||||||||||||||||||||||| || |||| ||||| ||||| ||||||||| |||||||||| |||||    
T  15562 aggactgttttgcaatttctctgcattcagagactaaattgacttctattctcccattcatggactaaagtcactaa 15638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 127952 - 128083
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||||| | | | || |||||||    
T  127952 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaagtacttaagtgactac 128051  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | |||||  ||||| | |||||||||||||||    
T  128052 tcttttctgattcaggaactaaagtgactaat 128083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 11726 - 11853
Alignment:
Q  28 tctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactactattt 127  Q
    |||||| |||||||| |||||| |||||||||||    |||||  || ||||||| |||||||||||||||||||||||||| ||||  |||||||  ||    
T  11726 tctgttagtcactttagtccctaaaattgactaagagagtcta--tttaaggactattttgcaatttctctgcattcagggactaaagcgactactcatt 11823  T
Q  128 tcccattcaaggactaaagtgactaattcc 157  Q
    |||||||||   |||||||||| |||||||    
T  11824 tcccattcagaaactaaagtgattaattcc 11853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 27622 - 27484
Alignment:
Q  21 tgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgact 120  Q
    ||||||||  ||| |||||||| |||| |||||||||| |||   |||||| ||||  ||||||||||||||||||| | ||||||||  |||| | |||    
T  27622 tgtagacttcgttcgtcactttagtccttgaaattgaccaacagagtctacattaagagactgttttgcaatttctccgtattcaggggctaaagtaact 27523  T
Q  121 actattttcccattcaaggactaaagtgactaattcctc 159  Q
    |||  ||| | ||||| ||||||||||||||||||||||    
T  27522 actcattttctattcagggactaaagtgactaattcctc 27484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 72114 - 72192
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgactactattttcccattcaaggactaaagtgactaattc 156  Q
    |||||||||||||||||||   |||||||||| |||| ||||||||  ||||||||||| |||||||||||||||||||    
T  72114 ggactgttttgcaatttctgcacattcagggactaaagtgactacttctttcccattcagggactaaagtgactaattc 72192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 71984 - 71943
Alignment:
Q  78 ggactgttttgcaatttctctgcattcagggattaaaatgac 119  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||    
T  71984 ggactattttgcaatttatctgcattcagggattaaagtgac 71943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 57597 - 57728
Alignment:
Q  23 tagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaatttctctgcattcagggattaaaatgactac 122  Q
    ||||||| ||| ||||| ||  ||| ||||||||||||||   ||||||||| ||| |||||||||||||||||||||||| | | | | || |||||||    
T  57597 tagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattaaagtacttaagtgactac 57696  T
Q  123 tattttcccattcaaggactaaagtgactaat 154  Q
    | |||||  ||||| | |||||||||||||||    
T  57697 tcttttctgattcaggaactaaagtgactaat 57728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 314204 - 314296
Alignment:
Q  1 tagtcaatttagtcatttactgtagactctgtttgtcactttggtccctgaaattgactaacgttgtctacgttaaaggactgttttgcaattt 94  Q
    ||||||||||||||  | | |||||| |||||| |||||||| |||||||||||| || |||   |||||| ||  ||||||||||||||||||    
T  314204 tagtcaatttagtccctgaatgtagagtctgttagtcactttagtccctgaaattaaccaacagagtctacatt-taggactgttttgcaattt 314296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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