View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_58 (Length: 251)
Name: NF0808_low_58
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43619074 - 43618837
Alignment:
| Q |
1 |
cttgcagttgtgtgtgaatttcagtggaacaaaaataaagttataataattttgatggttgaatacatgaatgaaataaagttattcttttgctaaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43619074 |
cttgcagttgtgtgtgaatttcagtggaacaaaaataaagttataataattttgatcgttgaatacatgaatgaaataaagttattcttttgataaatac |
43618975 |
T |
|
| Q |
101 |
atgatattttgttatgttccttgtttaggaagccatctagtggataatttttgcgtactttttcccttttaagaaatttgcaactgaaaattacattgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43618974 |
atgatattttgttatgttccttgtttaggaagccatctagtggataatttttgcgtac--tttcccttttaagaaatttgcaactgaaaattacattgtg |
43618877 |
T |
|
| Q |
201 |
tattttatgtttgtgtgcagtttttaacattctttttcat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43618876 |
tattttatgtttgtgtgcagtttttaacattctttttcat |
43618837 |
T |
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