View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_6 (Length: 603)
Name: NF0808_low_6
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 30 - 595
Target Start/End: Complemental strand, 50677029 - 50676467
Alignment:
| Q |
30 |
gttttggccatatgattgatcaaatggaagcagatcagttaactatttctaatagcaatcatagacataatttggatagccagaaacaaaaaagtttttt |
129 |
Q |
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| T |
50677029 |
gttttggccatatgattgatcaaatggaagcagatcagttaactatttctaatagcaatcatagacatcatttggatagccagaaacaaaa--gtttttt |
50676932 |
T |
|
| Q |
130 |
aggataaagatacccttatccaagaatccataaataaggctctggataatgctgtaaattactcagaagctaaggaaaatgaaaatcaaattaacagaaa |
229 |
Q |
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| T |
50676931 |
aggataaagatacccttatccaagaatccataaataaggctctggataatgctgtaaattactcagaagcttaggaaaatgaaaatcaaattaacagaaa |
50676832 |
T |
|
| Q |
230 |
gtaggagagaaaataaaggaaaagttggggatttttgttattgttagcgttctgcaaattctaggagagaagtcaatagggttgcgctcaccttttagtt |
329 |
Q |
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|||||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
50676831 |
ctaggagagaaaatagaggaaaaattagggatttttgttattgttagcattctgcaaattctaggagagaagtcaatagggctgcgctcaccttttagct |
50676732 |
T |
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| Q |
330 |
cagtccgctagttagaatttagatatatggtgattgctctataggcccctcagaatgatcaacctctgagataagtgatcgggaggtacactccgatcca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50676731 |
cagtccgctagttagaatttagatatatggtgattgctctataggccccttagaatgatcaacctctgagataagtgatcgggaggtgcactccgatcca |
50676632 |
T |
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| Q |
430 |
aaaaataacggttgggtggtaaatagttttccattatgagaagaaattgcttgtttcctcccttttcccatttaaaaagatgaaaatactttagccaaac |
529 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676631 |
ataaataacggttgggtggtaaatagttttccattatgagaagaaattgcttgtttcctcccttttcccatttaaaaagatgaaaatactttagccaaac |
50676532 |
T |
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| Q |
530 |
nnnnnnnntgcattattcattctcgtcttatgcactactcttgttgcaactcaattcagaattatc |
595 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50676531 |
-aaaaaaatgcattattcattctcgtcttatgcgctactcttgttgcaactcaattcagaattatc |
50676467 |
T |
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