View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_64 (Length: 204)
Name: NF0808_low_64
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5281471 - 5281345
Alignment:
| Q |
1 |
cattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5281471 |
cattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttac |
5281372 |
T |
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| Q |
101 |
gacagctatcttcaacgctcctatgct |
127 |
Q |
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| T |
5281371 |
gacagctatcttcaacgctcctatgct |
5281345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5289503 - 5289377
Alignment:
| Q |
1 |
cattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttac |
100 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| || |
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| T |
5289503 |
cattaatttctttttctagtgctgcttttgtttatgtaaggtcttacttgactgcacttttgggattaaaagcttctactgttttcttctcaagcttcac |
5289404 |
T |
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| Q |
101 |
gacagctatcttcaacgctcctatgct |
127 |
Q |
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| T |
5289403 |
tacagctatcttcaatgctccgatgct |
5289377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5307878 - 5308004
Alignment:
| Q |
1 |
cattaatttctttttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttac |
100 |
Q |
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||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
5307878 |
cattaatttctttttctagtgctgcttttatatatgtaagatcttacttgactgcacttttgggattaaaagcttctactgctttcttctcaagcttcac |
5307977 |
T |
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| Q |
101 |
gacagctatcttcaacgctcctatgct |
127 |
Q |
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|||||||||||||| ||||| ||||| |
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| T |
5307978 |
tacagctatcttcaatgctccaatgct |
5308004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 15126656 - 15126770
Alignment:
| Q |
13 |
tttctagtgctgcttttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatctt |
112 |
Q |
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|||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||| | || |||||||| || ||| ||||||| |
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| T |
15126656 |
tttctagtacttcttttgtatatgtaaggtcttactttgctgcacttttgggattaaaagcttcgacggctttcttctcaagcttcactacatctatctt |
15126755 |
T |
|
| Q |
113 |
caacgctcctatgct |
127 |
Q |
| |
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||| ||||| ||||| |
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| T |
15126756 |
caatgctccaatgct |
15126770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 14948682 - 14948582
Alignment:
| Q |
27 |
tttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcctatgc |
126 |
Q |
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|||||| || ||||| ||||||||||||||||| | |||||||||||||| ||||| | || |||||||| || |||||||||||||| ||||| |||| |
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| T |
14948682 |
tttgtacatataaggacttacttgactgcacttcttggattaaaagcttccgctgctttcttctcaagcttcactacagctatcttcaatgctccaatgc |
14948583 |
T |
|
| Q |
127 |
t |
127 |
Q |
| |
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| |
|
|
| T |
14948582 |
t |
14948582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 5314866 - 5314960
Alignment:
| Q |
27 |
tttgtatatttaaggtcttacttgactgcacttttgggattaaaagcttctactgctattttttcaagctttacgacagctatcttcaacgctcc |
121 |
Q |
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||||||||| | ||||||||||||| |||| | | |||||||||||||||| ||| | || |||||||| || | |||||||||||| ||||| |
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| T |
5314866 |
tttgtatatctgaggtcttacttgaatgcatatctcggattaaaagcttctaatgccttcttctcaagcttcactaaagctatcttcaatgctcc |
5314960 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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