View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0808_low_7 (Length: 569)
Name: NF0808_low_7
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 204 - 540
Target Start/End: Original strand, 4762851 - 4763192
Alignment:
| Q |
204 |
agttttctctcctcatacactatatactatgcataagcattcttgagatttcttttccaatcaaacaaagaaaactttattgaacaagtataaaagat-- |
301 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4762851 |
agttttctcccctcatacactata--ctatgcataag-attcttgagatttcttttccaatcaaacaaagaaaactttattaaacaagtataaaagataa |
4762947 |
T |
|
| Q |
302 |
-----tatcaacaaaaagaaaaagttaaggggagagatcgtacaatctccacccaaacaaaattaataaattgcttgttgatctttagttaggtaaatat |
396 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4762948 |
aagattatcaacaaaaggaaaaagttaaggggagagatcgtacaatctccaccgaaacaaaattaataaattgcttgttgatctttagttaggtaaatat |
4763047 |
T |
|
| Q |
397 |
tannnnnnn-attgaaaagagtttaggtaagttaagttttggaatctcatttgaattagacgagactttaagattcaacgagtaaatgtgcttataaatc |
495 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||| ||||| |
|
|
| T |
4763048 |
ttttttttttattgaaaagagtttaggtaagttaagttttggaatctcatttgaattagaccagacttcaaggttcaacgagtaaatgtgtttacaaatc |
4763147 |
T |
|
| Q |
496 |
actcataaaaatggttctaatgttaatagtgggagttgaactcac |
540 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
4763148 |
actcataaaaatggttctagtgttaatagcgggagttgaattcac |
4763192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 4762757 - 4762853
Alignment:
| Q |
78 |
cagagaaaggaaatttggaaggaaaccatat----cgaaggaaaattttagcatttctgaggtaatgtcattgttaccatactttttcaatatgagt |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4762757 |
cagagaaaggaaatttggaacgaaaccatatatatcgaaggagaattttagcatttctgaggtaatgtcattgttaccatactttttcaatatgagt |
4762853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 47684593 - 47684546
Alignment:
| Q |
119 |
ttttagcatttctgaggtaatgtcattgttaccatactttttcaatat |
166 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
47684593 |
ttttagcatttatgatgtaatatcattgttaccatgctttttcaatat |
47684546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1136 times since January 2019
Visitors: 5826