View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0808_low_8 (Length: 538)
Name: NF0808_low_8
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0808_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 30 - 526
Target Start/End: Original strand, 14294404 - 14294899
Alignment:
| Q |
30 |
tgttcttcttctgggaaagagaagagaaggatttgctgtatgtcagtggaatactacagtacagttttgtacggtgagcttgctaacccttcacaatggc |
129 |
Q |
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| T |
14294404 |
tgttcttcttctgggaaagagaagagaaggatttgctgtatgtcagtggaatactacagtacagttttgtacggtgagcttgctaacccttcacaatggc |
14294503 |
T |
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| Q |
130 |
cacagctcaggaaaaaacgacgcctgacccatctcaggatccaacccgaaacactgattctttccctccaaaaaccactcctactaccaaaggttcagcc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
14294504 |
cacagctcaggaaaaaacgacgcctgacccatctcaggatccaacccgaaacactgattctttccctccaaaaactactcctactaccaaaggttcaacc |
14294603 |
T |
|
| Q |
230 |
tttactctctcagtagttctcactttggtcttaatttgttcattttattgaaaaaagtaggnnnnnnnnatgtgaaattctactacatgttatttggaca |
329 |
Q |
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| T |
14294604 |
tttactctcttagtagttctcactttggtcttaatttgttcattttattgaaaaaagtagg-tttttttatgtgaaattctactacatgttatttggaca |
14294702 |
T |
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| Q |
330 |
agttttgtttcatttttagaatagataattggattaaagttactgctgagtttgactttatgtatttatttggagtatttactattttggtcttttttca |
429 |
Q |
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| T |
14294703 |
agttttgtttcatttttagaatagataattggattaaagttactgctgagtttgagtttatgtatttatttggagtatttactattttggtcttttttca |
14294802 |
T |
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| Q |
430 |
tgtacttggttagtttttcgttgtactttatgagaatttggttgaataagtaatggaatttttagttggcaatgtgtagtttatgctgtccttttgt |
526 |
Q |
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| T |
14294803 |
tgtactaggttagtttttcgttgtactttatgagaatttggttgaataagtaatggaatttttagttggtaatgtgtagtttatgctgtccttttgt |
14294899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 29135754 - 29135843
Alignment:
| Q |
65 |
ctgtatgtcagtggaatactacagtacagttttgtacggtgagcttgctaacccttcacaatggccacagctcaggaaaaaacgacgcct |
154 |
Q |
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|||||||||||||||||| |||||| | ||| ||||||||||||||||| |||| |||||||||||| | ||||||||||||||||| |
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| T |
29135754 |
ctgtatgtcagtggaatattacagtggaatttactacggtgagcttgctaatcctttgcaatggccacagttgaggaaaaaacgacgcct |
29135843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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