View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0808_low_9 (Length: 527)

Name: NF0808_low_9
Description: NF0808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0808_low_9
NF0808_low_9
[»] chr1 (9 HSPs)
chr1 (42-458)||(6521980-6522394)
chr1 (273-462)||(6516870-6517059)
chr1 (277-461)||(6512475-6512659)
chr1 (277-462)||(6506562-6506753)
chr1 (171-234)||(6506438-6506501)
chr1 (297-371)||(47778382-47778456)
chr1 (297-451)||(47788424-47788578)
chr1 (411-451)||(47759914-47759954)
chr1 (411-451)||(47712999-47713039)
[»] scaffold0341 (4 HSPs)
scaffold0341 (277-462)||(587-778)
scaffold0341 (277-462)||(8240-8431)
scaffold0341 (171-234)||(463-526)
scaffold0341 (171-234)||(8116-8179)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 42 - 458
Target Start/End: Complemental strand, 6522394 - 6521980
Alignment:
Q  42 caacaatattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacacatagtgagacattaaatatttaatatatcaaaga 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  6522394 caacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacaca--gtgagacattaaatatttaatatatcaaaga 6522297  T
Q  142 tatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacagg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522296 tatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacagg 6522197  T
Q  242 caccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522196 caccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacct 6522097  T
Q  342 aacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccat 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522096 aacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccat 6521997  T
Q  442 atatggtttggttatta 458  Q
    |||||||||||||||||    
T  6521996 atatggtttggttatta 6521980  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 273 - 462
Target Start/End: Original strand, 6516870 - 6517059
Alignment:
Q  273 gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt 372  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||  | ||| |||||||||||  |||  ||||| |    
T  6516870 gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat 6516969  T
Q  373 tgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 462  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  6516970 tgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttg 6517059  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 277 - 461
Target Start/End: Original strand, 6512475 - 6512659
Alignment:
Q  277 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat 376  Q
    |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||  |||  ||| |||||||    
T  6512475 gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat 6512574  T
Q  377 agattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattattt 461  Q
    |||||  |||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  6512575 agattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattattt 6512659  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 277 - 462
Target Start/End: Original strand, 6506562 - 6506753
Alignment:
Q  277 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 370  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  6506562 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 6506661  T
Q  371 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 462  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  6506662 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 6506753  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 6506438 - 6506501
Alignment:
Q  171 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 234  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  6506438 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 6506501  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
Q  297 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct 371  Q
    |||||| | ||||||||||| || |||||||||||||||||||| | |||||| ||||||||  |||||||||||    
T  47778456 gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct 47778382  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 451
Target Start/End: Complemental strand, 47788578 - 47788424
Alignment:
Q  297 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcat 396  Q
    |||||| | ||||||||||| || ||||||| |||||||||||| | ||||||| |||||||  |||||| |||    || ||||||| |||||||||||    
T  47788578 gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaacaatcat 47788479  T
Q  397 cacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 451  Q
    ||||   ||    |||||| ||||| || || ||||||||||||||||| |||||    
T  47788478 cacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttg 47788424  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 47759914 - 47759954
Alignment:
Q  411 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 451  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttg 47759954  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 47712999 - 47713039
Alignment:
Q  411 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 451  Q
    |||||||||||||| || || ||||||||||||||||||||    
T  47712999 gacaaatcaggtgtacactgcacaagaccatatatggtttg 47713039  T

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Target: scaffold0341 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 277 - 462
Target Start/End: Original strand, 587 - 778
Alignment:
Q  277 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 370  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  587 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 686  T
Q  371 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 462  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  687 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 778  T

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Target: scaffold0341; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 277 - 462
Target Start/End: Original strand, 8240 - 8431
Alignment:
Q  277 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 370  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  8240 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 8339  T
Q  371 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttg 462  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  8340 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttg 8431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 463 - 526
Alignment:
Q  171 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 234  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  463 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 8116 - 8179
Alignment:
Q  171 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 234  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  8116 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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