View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809-Insertion-12 (Length: 190)
Name: NF0809-Insertion-12
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-12 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 51112062 - 51112244
Alignment:
| Q |
8 |
ctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctc |
107 |
Q |
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| T |
51112062 |
ctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatgctgcatctttggtcttctc |
51112161 |
T |
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| Q |
108 |
agcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggtct |
190 |
Q |
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| T |
51112162 |
ggcagcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtct |
51112244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 51112253 - 51112344
Alignment:
| Q |
58 |
gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
149 |
Q |
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| T |
51112253 |
gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc |
51112344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 51111995 - 51112081
Alignment:
| Q |
61 |
tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgca |
147 |
Q |
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| T |
51111995 |
tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgca |
51112081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 51112234 - 51112313
Alignment:
| Q |
93 |
atctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcac |
172 |
Q |
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| T |
51112234 |
atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcac |
51112313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
| Q |
109 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt |
185 |
Q |
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| T |
51111989 |
gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
| Q |
94 |
tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc |
155 |
Q |
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| T |
51111875 |
tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc |
51111936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 51112165 - 51112257
Alignment:
| Q |
57 |
agcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
149 |
Q |
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| T |
51112165 |
agcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatc |
51112257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 51111909 - 51111980
Alignment:
| Q |
8 |
ctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttgg |
79 |
Q |
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| T |
51111909 |
ctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttgg |
51111980 |
T |
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