View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809-Insertion-13 (Length: 269)

Name: NF0809-Insertion-13
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809-Insertion-13
NF0809-Insertion-13
[»] chr7 (7 HSPs)
chr7 (8-268)||(46993197-46993456)
chr7 (135-266)||(39695157-39695288)
chr7 (128-268)||(7995013-7995153)
chr7 (147-268)||(7352348-7352468)
chr7 (167-248)||(11727326-11727407)
chr7 (163-268)||(46265281-46265386)
chr7 (79-119)||(12471870-12471910)
[»] chr8 (8 HSPs)
chr8 (74-266)||(44223307-44223499)
chr8 (135-268)||(17722398-17722531)
chr8 (74-268)||(7956318-7956512)
chr8 (136-268)||(35948903-35949035)
chr8 (131-220)||(34760832-34760921)
chr8 (167-235)||(9040519-9040587)
chr8 (167-256)||(3767646-3767735)
chr8 (83-119)||(9040440-9040476)
[»] chr1 (7 HSPs)
chr1 (69-268)||(25785760-25785959)
chr1 (135-268)||(16584842-16584975)
chr1 (167-268)||(1161411-1161512)
chr1 (135-268)||(8084062-8084195)
chr1 (135-265)||(18461184-18461314)
chr1 (132-268)||(11619990-11620126)
chr1 (136-220)||(42009995-42010079)
[»] scaffold0879 (1 HSPs)
scaffold0879 (131-268)||(558-695)
[»] chr4 (4 HSPs)
chr4 (131-268)||(24466293-24466430)
chr4 (132-269)||(4413526-4413663)
chr4 (135-268)||(23107885-23108022)
chr4 (136-268)||(28319268-28319400)
[»] scaffold0565 (1 HSPs)
scaffold0565 (135-268)||(1822-1955)
[»] chr5 (4 HSPs)
chr5 (135-268)||(16746399-16746532)
chr5 (136-268)||(19947784-19947916)
chr5 (135-236)||(16746550-16746651)
chr5 (135-232)||(31895971-31896068)
[»] chr3 (2 HSPs)
chr3 (140-268)||(46655595-46655723)
chr3 (167-256)||(11503316-11503405)
[»] chr2 (5 HSPs)
chr2 (135-256)||(4638229-4638350)
chr2 (135-268)||(31111488-31111621)
chr2 (136-265)||(13852250-13852379)
chr2 (179-268)||(36009278-36009367)
chr2 (167-256)||(38607073-38607162)
[»] scaffold0070 (1 HSPs)
scaffold0070 (153-233)||(13839-13919)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 46993197 - 46993456
Alignment:
Q  8 agaagctacgttaatttatcataatggaagtgagttatgaatgttcttgagtagtgatagctaggaggtggaagtggttcggataaaaccgacgaaattg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||    
T  46993197 agaagctacgttaatttatcataatggaagtgagttatgaatgttcttgagtagtgatagctagg-ggtggaagtggttcggacaaaatcgatgaaattg 46993295  T
Q  108 aaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttc 207  Q
    ||||| |||| |        ||| || |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46993296 aaagttcaaatctaaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttc 46993395  T
Q  208 atttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 268  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  46993396 atttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttacta 46993456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 39695157 - 39695288
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39695157 cttgtttggttcggtttgaaaccgatctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaac 39695256  T
Q  235 caatccaatgataaccacactctttattttac 266  Q
    |||||  ||||||||| ||||| |||||||||    
T  39695257 caatctgatgataacctcactccttattttac 39695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 7995013 - 7995153
Alignment:
Q  128 atttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaacc 227  Q
    |||||| ||||||||| ||||||  ||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  7995013 atttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaacc 7995112  T
Q  228 gatgaaccaatccaatgataaccacactctttattttacta 268  Q
    ||||||||||||| || |||||||||||| |||||||||||    
T  7995113 gatgaaccaatccgataataaccacactccttattttacta 7995153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 147 - 268
Target Start/End: Complemental strand, 7352468 - 7352348
Alignment:
Q  147 ggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgat 246  Q
    ||||||||| ||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  7352468 ggtttgaaaccgatccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgat 7352370  T
Q  247 aaccacactctttattttacta 268  Q
    |||||||||| |||||||||||    
T  7352369 aaccacactccttattttacta 7352348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 11727407 - 11727326
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataa 248  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  11727407 caatcaaaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 46265386 - 46265281
Alignment:
Q  163 gaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttatt 262  Q
    ||||||||| |||| ||||| |||||||||||||    |||| |||||| |||||||  ||||||||||||||||  ||||| ||||  ||||| | |||    
T  46265386 gaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcattttgagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcatt 46265287  T
Q  263 ttacta 268  Q
    ||||||    
T  46265286 ttacta 46265281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 12471910 - 12471870
Alignment:
Q  79 aagtggttcggataaaaccgacgaaattgaaagtccaaacc 119  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  12471910 aagtggttcggataaaaccgatgaaattgaaaatccaaacc 12471870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 44223499 - 44223307
Alignment:
Q  74 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 173  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        || ||||||||||||| || |||| ||| ||||||||| |||||||    
T  44223499 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaatcga 44223400  T
Q  174 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 266  Q
    |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  44223399 aaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 44223307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 17722531 - 17722398
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||| | ||| |||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  17722531 cttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaac 17722432  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||| ||||||||||||||| ||| |||||||    
T  17722431 caatccgatgataaccacactcattactttacta 17722398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 74 - 268
Target Start/End: Complemental strand, 7956512 - 7956318
Alignment:
Q  74 ggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatcaatcga 173  Q
    |||| |||||||||||| |||||| ||||||  |||||||||||||        ||| || |||| || | | ||||||||| ||||  ||| |||||||    
T  7956512 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgctttgtttggtttgaaaccgattcgaaccaatcga 7956413  T
Q  174 aactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 268  Q
    ||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  7956412 aaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactccttattttacta 7956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 35948903 - 35949035
Alignment:
Q  136 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 235  Q
    |||||||| ||||||||||| ||||| |||||| || |||  |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  35948903 ttgtttggttcggtttgaaaccgatccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaacc 35949002  T
Q  236 aatccaatgataaccacactctttattttacta 268  Q
    ||||| |||||||| ||| || |||||||||||    
T  35949003 aatccgatgataacaacattccttattttacta 35949035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 34760921 - 34760832
Alignment:
Q  131 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 220  Q
    ||||||||||||| ||||||  ||||||| | ||| ||| | |||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  34760921 tgatcttgtttggttcggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 9040519 - 9040587
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 235  Q
    ||||| |||| ||||| ||||||||||||||  |||||||||||| ||||||   ||||||||||||||    
T  9040519 caatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 3767735 - 3767646
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 256  Q
    ||||| |||| ||||||||||||||||||||  ||||||| |||| |||||||    |||||||||||| | || ||| ||||| |||||    
T  3767735 caatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactc 3767646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 9040440 - 9040476
Alignment:
Q  83 ggttcggataaaaccgacgaaattgaaagtccaaacc 119  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  9040440 ggttcggataaaaccgatgaaatcgaaagtccaaacc 9040476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 25785760 - 25785959
Alignment:
Q  69 taggaggtggaagtggttcggataaaaccgacgaaattgaaagtccaaaccnnnnnnncatttgatcttgtttgggtcggtttgaaatcgatctgaatca 168  Q
    |||| |||| |||||||||||| |||||| |||||| ||||| | ||||||        ||  || ||||||||| ||||||||||| ||||| ||| ||    
T  25785760 tagggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaacca 25785859  T
Q  169 atcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 268  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  25785860 atcgaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttacta 25785959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 16584975 - 16584842
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16584975 cttgtttggttcggtttgaaaccgatccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaac 16584876  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||  |||||||||| |||| |||||||||||    
T  16584875 caatctgatgataaccaaactccttattttacta 16584842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 1161512 - 1161411
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttac 266  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1161512 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttac 1161413  T
Q  267 ta 268  Q
    ||    
T  1161412 ta 1161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 8084062 - 8084195
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| | ||||||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||     
T  8084062 cttgtttggtttggtttgaaaccaatccgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaat 8084161  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||| ||||||||||||||| |||||||||||    
T  8084162 caatccgatgataaccacactccttattttacta 8084195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 18461184 - 18461314
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||| | ||||||| ||||||||||| | ||||| |||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18461184 cttgtttagttcggtttcaaatcgatctggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaac 18461283  T
Q  235 caatccaatgataaccacactctttatttta 265  Q
    |||||| ||||||||||||||| ||| ||||    
T  18461284 caatccgatgataaccacactcattaattta 18461314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 132 - 268
Target Start/End: Original strand, 11619990 - 11620126
Alignment:
Q  132 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 231  Q
    |||||||||||| || |||||||| |||||  ||  ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  11619990 gatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatg 11620089  T
Q  232 aaccaatccaatgataaccacactctttattttacta 268  Q
    ||||||||| ||||||  ||||||  |||||||||||    
T  11620090 aaccaatccgatgatactcacactacttattttacta 11620126  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 42010079 - 42009995
Alignment:
Q  136 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 220  Q
    |||||||| ||||||||||| |||||  || |||| ||||| |||||||||| |||||  |||||||||||||||| ||||||||    
T  42010079 ttgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 695 - 558
Alignment:
Q  131 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 230  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  695 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 596  T
Q  231 gaaccaatccaatgataaccacactctttattttacta 268  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  595 gaaccaatccgatgataaccacactccttattttacta 558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 24466430 - 24466293
Alignment:
Q  131 tgatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 230  Q
    ||||||||||||| ||||||||||| ||||| ||| |||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24466430 tgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgat 24466331  T
Q  231 gaaccaatccaatgataaccacactctttattttacta 268  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  24466330 gaaccaatccgatgataaccacactccttattttacta 24466293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 132 - 269
Target Start/End: Original strand, 4413526 - 4413663
Alignment:
Q  132 gatcttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatg 231  Q
    |||||||||||| ||||||| ||| ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  4413526 gatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgata 4413625  T
Q  232 aaccaatccaatgataaccacactctttattttactag 269  Q
    ||||||||| ||||||| ||||||| ||||||||||||    
T  4413626 aaccaatccgatgataatcacactccttattttactag 4413663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 23108022 - 23107885
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| | ||||||||| ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23108022 cttgtttggtttggtttgaaaccgatccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaac 23107923  T
Q  235 c----aatccaatgataaccacactctttattttacta 268  Q
    |    ||||| |||||||||| |||| |||||||||||    
T  23107922 caatcaatccgatgataaccatactccttattttacta 23107885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 28319400 - 28319268
Alignment:
Q  136 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 235  Q
    |||||||| ||||||||||| || || ||| ||||| |||  ||| || ||||||||||||||||||||||||||||||||| |||||| | |||||| |    
T  28319400 ttgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatc 28319301  T
Q  236 aatccaatgataaccacactctttattttacta 268  Q
    ||||  ||||||||||||||| |||||||||||    
T  28319300 aatctgatgataaccacactccttattttacta 28319268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 1955 - 1822
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  1955 cttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaac 1856  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||| |||||||| |||||| |||||||||||    
T  1855 caatccgatgataacaacactccttattttacta 1822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 16746532 - 16746399
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746532 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746433  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||| ||||||||| ||||| |||||||||||    
T  16746432 caatccgatgataacctcactccttattttacta 16746399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 19947784 - 19947916
Alignment:
Q  136 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 235  Q
    |||||||| || |||||||| |||||  || |||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19947784 ttgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaacc 19947883  T
Q  236 aatccaatgataaccacactctttattttacta 268  Q
    ||||| ||||||||||||||| |||||||||||    
T  19947884 aatccgatgataaccacactccttattttacta 19947916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 16746651 - 16746550
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| ||||||||||| |||||  || |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16746651 cttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaac 16746552  T
Q  235 ca 236  Q
    ||    
T  16746551 ca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 31895971 - 31896068
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatga 232  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  31895971 cttgtttggttcggtttgaaaccgatctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 140 - 268
Target Start/End: Original strand, 46655595 - 46655723
Alignment:
Q  140 ttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 239  Q
    |||| ||||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46655595 ttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatc 46655694  T
Q  240 caatgataaccacactctttattttacta 268  Q
    ||||||||||||||||  |||||||||||    
T  46655695 caatgataaccacacttcttattttacta 46655723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 11503405 - 11503316
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 256  Q
    |||||||||| |||||  |||||||||||||  | |||||||||| |||||||  ||||||||| |||| | || ||| ||||| |||||    
T  11503405 caatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaaccgaacccatgctaacctcactc 11503316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 4638229 - 4638350
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    |||||| || ||||||||||||||||| ||| ||||| | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4638229 cttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaac 4638328  T
Q  235 caatccaatgataaccacactc 256  Q
    |||||| |||||||||||||||    
T  4638329 caatccgatgataaccacactc 4638350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 31111488 - 31111621
Alignment:
Q  135 cttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaac 234  Q
    ||||||||| |||||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||    
T  31111488 cttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaac 31111587  T
Q  235 caatccaatgataaccacactctttattttacta 268  Q
    |||||   |||||||||||||  |||||||||||    
T  31111588 caatctggtgataaccacacttcttattttacta 31111621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 136 - 265
Target Start/End: Complemental strand, 13852379 - 13852250
Alignment:
Q  136 ttgtttgggtcggtttgaaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc 235  Q
    |||||||  ||||||||||| |||||  || ||||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13852379 ttgtttgattcggtttgaaaccgatccaaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaacc 13852280  T
Q  236 aatccaatgataaccacactctttatttta 265  Q
    ||||   |||||||||||||| ||||||||    
T  13852279 aatctgttgataaccacactccttatttta 13852250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 36009278 - 36009367
Alignment:
Q  179 atctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactctttattttacta 268  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttacta 36009367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 38607073 - 38607162
Alignment:
Q  167 caatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacactc 256  Q
    ||||| ||||||| || |||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||   ||| |||||||||||    
T  38607073 caatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactc 38607162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 13839 - 13919
Alignment:
Q  153 aaatcgatctgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaa 233  Q
    ||||||| | ||| ||||| ||||||||||  ||||||||||||   |||||||||||| |||||||   |||||||||||    
T  13839 aaatcgaaccgaaccaatctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaa 13919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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