View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809-Insertion-2 (Length: 810)
Name: NF0809-Insertion-2
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 279 - 558
Target Start/End: Complemental strand, 23144373 - 23144095
Alignment:
| Q |
279 |
atcactatatcagataaccttacccaagccctttatttcctttcacattttatgggagacattcatcaggtttgcatctatagaagcatcaaatcacaca |
378 |
Q |
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| T |
23144373 |
atcactatatcagataaccttacccaagccctttatttcctttcacattttatgggagacattcatcaggtttgcatctatagaagcatcaaatcacaca |
23144274 |
T |
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| Q |
379 |
taatataaattttcatataactttgaaattaatattgttaatcatcacatctgcagcctctacattgcggctttgtctcagacaaaggaggcaatgaaat |
478 |
Q |
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| T |
23144273 |
tgatatatatttccatataactttgaaattaatgttgctaatcatcatacttgcagcctctacattgtggctttgtctcagacaaaggaggcaatgaaat |
23144174 |
T |
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| Q |
479 |
aaccgttcattggtacacaagaaagcaaaatcttcaccatgtaggtcaaattcattgcttcatcaagtaaataaaacata |
558 |
Q |
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| T |
23144173 |
aactgttcattggtacacaagaaagcaaaatcttcaccatgtatgtcaaattcattgc-tcatgaagtatataaaacata |
23144095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 23144642 - 23144440
Alignment:
| Q |
27 |
tctccttgtgaataatatgctttgcaagattaaatttcttgtcgattacactttcaggggattgtaaagatcagaaaactggaattaaagggcgatgtgt |
126 |
Q |
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| T |
23144642 |
tctccttattaataatatgctttgcaagattaaacttcttgtcgatttaactttcaggggattgtaaagatcagaaaactggaattaaggggcgatgtgt |
23144543 |
T |
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| Q |
127 |
tgtgggggcgattaaaaattacaccaaccagctcatcgattacggcaatgccataaaacctaaatgtaaatgctcctttccaaattaataaactaagttg |
226 |
Q |
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| T |
23144542 |
tgtgggggctattacaaattacaccaaccagctcctcgattatggcagtgccataaaacctaaatgtaaatgctcctttccaaattaataaactaatttg |
23144443 |
T |
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| Q |
227 |
tac |
229 |
Q |
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||| |
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| T |
23144442 |
tac |
23144440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 656 - 810
Target Start/End: Complemental strand, 23144076 - 23143922
Alignment:
| Q |
656 |
attcatatctacttcgaaaactcacatatgaagattcaattcataattgtcatttgttgacagaccgtgtaagcatttttacagtgtatcaaaattattt |
755 |
Q |
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| T |
23144076 |
attcatatctacttcgaaaactcacatatgaagattcaattcataattgtcatttgttgacagaccgtgtaagcatttttacagtgtatcaaaattattt |
23143977 |
T |
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| Q |
756 |
tctattatacttttcactatctaattgtttatgcgatgaaggtttgggatgttag |
810 |
Q |
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| T |
23143976 |
tctattatacttttcactatctaattgtttacgcgatgaaggtttgggatgttag |
23143922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 23135103 - 23134991
Alignment:
| Q |
430 |
tgcagcctctacattgcggctttgtctcagacaaaggaggcaatgaaataaccgttcattggtacacaagaaagcaaaatcttcaccatgtaggtcaaat |
529 |
Q |
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|||||||||||||||| |||||||| || |||||||||||||||||||| || |||| |||||||| |||||| ||||||||||| |||||| ||||||| |
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| T |
23135103 |
tgcagcctctacattgtggctttgtttcggacaaaggaggcaatgaaattactgttcgttggtacaaaagaaaacaaaatcttcatcatgtatgtcaaat |
23135004 |
T |
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| Q |
530 |
tcattgcttcatc |
542 |
Q |
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| T |
23135003 |
acattgcttcatc |
23134991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 23135252 - 23135183
Alignment:
| Q |
286 |
tatcagataaccttacccaagccctttatttcctttcacattttatgggagacattcatcaggtttgcat |
355 |
Q |
| |
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||||||||||||| |||||||| ||| ||||||||||||||||||||||| || |||||||||||||| |
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| T |
23135252 |
tatcagataacctcacccaagctcttctattcctttcacattttatgggagatatccatcaggtttgcat |
23135183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 430 - 521
Target Start/End: Original strand, 23293576 - 23293667
Alignment:
| Q |
430 |
tgcagcctctacattgcggctttgtctcagacaaaggaggcaatgaaataaccgttcattggtacacaagaaagcaaaatcttcaccatgta |
521 |
Q |
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|||||||||||||||| |||||| ||||||||||||| |||||| ||| | ||||| |||| ||||| || ||||||||||||| |||| |
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| T |
23293576 |
tgcagcctctacattgtggctttctctcagacaaaggtggcaatacaattaatgttcaatggttcacaacgaaacaaaatcttcaccgtgta |
23293667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 49866199 - 49866141
Alignment:
| Q |
279 |
atcactatatcagataaccttacccaagccctttatttcctttcacattttatgggaga |
337 |
Q |
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||||| |||||||||||||| || ||||| ||| ||||||||| |||||||||||||| |
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| T |
49866199 |
atcacaatatcagataacctcacgcaagcacttcttttcctttctcattttatgggaga |
49866141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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