View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809-Insertion-3 (Length: 798)
Name: NF0809-Insertion-3
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 8 - 725
Target Start/End: Original strand, 3307925 - 3308640
Alignment:
| Q |
8 |
gaaatgaggatagtattcctccagcaagttccatagtaagacaaccaactgtggctcatgactatcagttggcaagagatcatggagaaaatgggaaaat |
107 |
Q |
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| T |
3307925 |
gaaatgaggatagtattcctccagcaagttctatagtaagacaaccaacagtggctcatgactatcagttggcaagagat---ggagaaaatgggaaaat |
3308021 |
T |
|
| Q |
108 |
tattgcaccaaagtggtatggctataaagaccttgtgtgttatgatctaagtgtggttgaaaatatgcaagtaggaatcgaatatctttaaggaagcagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308022 |
tattgcaccaaagtggtatggctataaagaccttgtgtgttatgatctaagtgtggttgaaaatatgcaagtaggaatcgaatatctttaaggaagcagt |
3308121 |
T |
|
| Q |
208 |
cgagaacaaggataattagaaatggcaatatgaaatgaatgaggaaaggagttcacggaagaagaaagtgaatgaggaaaagaatttatggagaagaatc |
307 |
Q |
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| T |
3308122 |
cgagaacaatgataattagaaatggcaatatgaaatgaatgaggaaaagagttcacggaagaagaaagtgaatgaggaaaagaattcatggagaagaatc |
3308221 |
T |
|
| Q |
308 |
aaacttgaaaacttgtaggactacctaaggatcaaagggtagttagatggaagtggaggtcgatgcctataacagggttcaagaatttcttggacttgat |
407 |
Q |
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| T |
3308222 |
aaacttgaaaacttgtgggactacctaaggatcaaagggtagttggatggaagtggaggtcgatgcctataacagggttcaagaatttctcggacttgat |
3308321 |
T |
|
| Q |
408 |
cagttttgctgaagagtaattcgagcactcaagagaacaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaatt |
507 |
Q |
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| T |
3308322 |
cagttttgctgaagagtaatttcggcactcaagagagcaacaagtggttgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaatt |
3308421 |
T |
|
| Q |
508 |
atagcgagtatgtcttcaaatatgtgtttttagcttctagaggtgacgatttaaatcatggtaattggggtgaaaggttgattcgaaccttggtggtgaa |
607 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3308422 |
atggcgagtatgtcttcaaatatgtgtttttagcttctagaggtgatgatttaaatcaaggtaattggggtgaaaggttgattcgagccttggtggtgaa |
3308521 |
T |
|
| Q |
608 |
aatgggttcaagtcac-tgtttttcttggttgattcgaatcaggggtagcatgattcaaattggatatttgctctctcccgcaaacaaatcattttcagg |
706 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
3308522 |
aatgggttcaagtcacttttttttcttggttgattcgaatcaggggtagcatgattcaaatttgatatttgctctctcccgcaaataaatcattttcagg |
3308621 |
T |
|
| Q |
707 |
ctgcattgtgtaaacaatc |
725 |
Q |
| |
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||| ||||||||||||||| |
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| T |
3308622 |
ctgaattgtgtaaacaatc |
3308640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 728 - 798
Target Start/End: Original strand, 3308668 - 3308738
Alignment:
| Q |
728 |
ttttgttctttcgattgattgtttgatttctctgcacattgcttctaggtttcttctagtttaaatcgcta |
798 |
Q |
| |
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|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3308668 |
ttttgttctttcgattgattttgtgatttctctacacattgcttctaggtttcttctagtttaaatcgcta |
3308738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
383 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
429 |
Q |
| |
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|||||||||||| |||||||||| ||| ||||| ||||||||||||| |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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