View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0809-Insertion-5 (Length: 710)

Name: NF0809-Insertion-5
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0809-Insertion-5
NF0809-Insertion-5
[»] chr8 (11 HSPs)
chr8 (6-434)||(6293691-6294108)
chr8 (602-710)||(6294196-6294306)
chr8 (489-555)||(33979682-33979748)
chr8 (633-697)||(6280704-6280768)
chr8 (542-576)||(6294109-6294143)
chr8 (469-558)||(17032929-17033018)
chr8 (469-558)||(17563365-17563454)
chr8 (317-381)||(32017803-32017867)
chr8 (335-381)||(8996613-8996659)
chr8 (107-189)||(33180155-33180237)
chr8 (444-558)||(36257672-36257788)
[»] chr5 (4 HSPs)
chr5 (95-574)||(6228568-6229043)
chr5 (90-148)||(18660199-18660257)
chr5 (307-372)||(26682912-26682977)
chr5 (307-371)||(41700880-41700945)
[»] chr3 (9 HSPs)
chr3 (81-382)||(7441239-7441534)
chr3 (444-564)||(7441537-7441657)
chr3 (88-425)||(43465842-43466177)
chr3 (307-560)||(25807037-25807299)
chr3 (463-563)||(30587574-30587674)
chr3 (469-535)||(43465726-43465792)
chr3 (321-372)||(3650590-3650641)
chr3 (160-193)||(13833911-13833944)
chr3 (522-563)||(25911647-25911688)
[»] chr2 (7 HSPs)
chr2 (81-563)||(17354276-17354765)
chr2 (95-564)||(30908934-30909403)
chr2 (81-151)||(42474100-42474170)
chr2 (307-382)||(11482731-11482806)
chr2 (146-188)||(42474015-42474057)
chr2 (475-555)||(42473647-42473727)
chr2 (316-382)||(1748247-1748313)
[»] chr1 (10 HSPs)
chr1 (88-247)||(12882446-12882605)
chr1 (90-187)||(15083678-15083775)
chr1 (308-563)||(12882659-12882926)
chr1 (87-168)||(18113927-18114007)
chr1 (444-559)||(18113578-18113693)
chr1 (467-563)||(15083951-15084047)
chr1 (454-513)||(15842106-15842165)
chr1 (467-559)||(27324629-27324721)
chr1 (307-377)||(18113771-18113838)
chr1 (307-372)||(45807291-45807356)
[»] chr7 (5 HSPs)
chr7 (81-205)||(4998572-4998696)
chr7 (308-563)||(25090053-25090306)
chr7 (307-377)||(4998409-4998479)
chr7 (307-434)||(19706091-19706217)
chr7 (333-434)||(19706232-19706330)
[»] chr4 (5 HSPs)
chr4 (94-434)||(43226266-43226595)
chr4 (130-197)||(9045748-9045815)
chr4 (335-378)||(9045941-9045984)
chr4 (321-382)||(15632399-15632460)
chr4 (307-364)||(50376103-50376160)
[»] scaffold0008 (3 HSPs)
scaffold0008 (307-560)||(10389-10653)
scaffold0008 (266-557)||(35887-36190)
scaffold0008 (81-187)||(10668-10768)
[»] scaffold2061 (3 HSPs)
scaffold2061 (81-187)||(501-607)
scaffold2061 (307-434)||(75-201)
scaffold2061 (390-434)||(216-260)
[»] scaffold0778 (1 HSPs)
scaffold0778 (310-434)||(1213-1337)
[»] scaffold0028 (1 HSPs)
scaffold0028 (107-195)||(33431-33519)
[»] scaffold1390 (1 HSPs)
scaffold1390 (310-434)||(767-891)
[»] chr6 (1 HSPs)
chr6 (116-167)||(8037860-8037911)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 6 - 434
Target Start/End: Original strand, 6293691 - 6294108
Alignment:
Q  6 caccatgaagtacacacctctctaagattaagtgtgtcacggtgtccgataccagtgccggagccagnnnnnnntgtttgggtgggccgctaaaataaac 105  Q
    ||||||||||||||||||||||||||      ||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||    
T  6293691 caccatgaagtacacacctctctaag------tgtgtcacggtgtccgacaccagtgccggagccagaaaaaaatgtttgggtgggccgctaaaataaac 6293784  T
Q  106 tataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcgggtgaatgcttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6293785 tataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcgggtgaatgcttt 6293884  T
Q  206 nnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactcttaattgggggaattttttacnnnnnnn 305  Q
               |||||||  ||||||||||||||||||||||                  |||||||||||||||||||| ||||||||||||           
T  6293885 aaaaaaacaaattacata--ttactaatgctataaattatga--tttttttatttattttataatacaactcttaattggaggaattttttac----aaa 6293976  T
Q  306 ncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcat---gnnnnnnntcacatatgtcac 402  Q
     ||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||           |||||||||||||    
T  6293977 acaatataaaagagatttgaaaccaccaaaaattaaaaggtctgtaaacctccgttaactagccaagtataagcataaaaaaaaaaatcacatatgtcac 6294076  T
Q  403 ttttggaaccaccgaaaatctaaacggttgaa 434  Q
    ||||||||||||||||||||||||||||||||    
T  6294077 ttttggaaccaccgaaaatctaaacggttgaa 6294108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 602 - 710
Target Start/End: Original strand, 6294196 - 6294306
Alignment:
Q  602 gggctccgcctgtatccgacacacgtcgatatttgacattcatatgacactcata--caacacatgttgaaccaactcagtctagtgtcccaaaaattaa 699  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  6294196 gggctccgcctctatccgacacacgtcgatatttgacattcatatgacactcatatacaacacatgttgaaccaactcagtctagtgtcccaaaaattaa 6294295  T
Q  700 tcattatttta 710  Q
    |||||||||||    
T  6294296 tcattatttta 6294306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 555
Target Start/End: Complemental strand, 33979748 - 33979682
Alignment:
Q  489 ccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaat 555  Q
    |||||||||||||||||| ||||||| || | || ||||||||||||||||| ||||||||||||||    
T  33979748 ccactaaaccaattagtgcgaatttggatctaccaaacactaaaattgtagcaaaattgtttaaaat 33979682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 633 - 697
Target Start/End: Original strand, 6280704 - 6280768
Alignment:
Q  633 tttgacattcatatgacactcatacaacacatgttgaaccaactcagtctagtgtcccaaaaatt 697  Q
    |||||||||| ||||||||| |||| ||| |||||| ||||||| ||||| ||||||||||||||    
T  6280704 tttgacattcttatgacacttatacgacatatgttggaccaactaagtctggtgtcccaaaaatt 6280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 576
Target Start/End: Original strand, 6294109 - 6294143
Alignment:
Q  542 aaattgtttaaaatctcgcaaagctgacttatgat 576  Q
    |||||||||||||||||||||||||||||||||||    
T  6294109 aaattgtttaaaatctcgcaaagctgacttatgat 6294143  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 558
Target Start/End: Original strand, 17032929 - 17033018
Alignment:
Q  469 tttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctc 558  Q
    ||||||| |||||||||||||||||| |||| |||||||| ||||  ||||  ||||  ||||||  | ||| |||||||||||||||||    
T  17032929 tttttaacttttcaggtgggccactacaccatttagtggggatttagatatatcgaatgctaaaaccgcagcaaaattgtttaaaatctc 17033018  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 558
Target Start/End: Original strand, 17563365 - 17563454
Alignment:
Q  469 tttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctc 558  Q
    ||||||| |||||||||||||||||| |||| |||||||| ||||  ||||  ||||  ||||||  | ||| |||||||||||||||||    
T  17563365 tttttaacttttcaggtgggccactacaccatttagtggggatttagatatatcgaatgctaaaaccgcagcaaaattgtttaaaatctc 17563454  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 32017803 - 32017867
Alignment:
Q  317 gagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcat 381  Q
    ||||||||||||||    ||||| ||||||||||||||||||||||||  | |||||||||||||    
T  32017803 gagatttgaaacccatgtaaatttgaaggtctataaacctccgctaacatgtcaagtataagcat 32017867  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 8996659 - 8996613
Alignment:
Q  335 aaattagaaggtctataaacctccgctaactagccaagtataagcat 381  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||    
T  8996659 aaattcgaaggtctataaaccttcgctaacatgccaagtataagcat 8996613  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 33180155 - 33180237
Alignment:
Q  107 ataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaag 189  Q
    |||||| ||||||| |||||| |||||||||||  |||||||||| ||||  ||||||||| |  || |||||||| ||||||    
T  33180155 ataaactataatatataaacacaaaattaaagttgtaataagcatcaagcacgaagttgaagtgacagagtttgacgaaaaag 33180237  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 558
Target Start/End: Original strand, 36257672 - 36257788
Alignment:
Q  444 aaaacctcgcaaaatagtcctataatttttaa--tttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagct 541  Q
    |||| |||||||||| | ||||||||||||||  |||||| | ||| |||||| |||| || | || |||||  |||||||||| | |||||| || ||     
T  36257672 aaaaactcgcaaaatggacctataatttttaatttttttcggatggaccactataccattttgcggaaatttagatatgccgaaaattaaaatggtcgca 36257771  T
Q  542 aaattgtttaaaatctc 558  Q
     ||||||||||||||||    
T  36257772 gaattgtttaaaatctc 36257788  T

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Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 95 - 574
Target Start/End: Original strand, 6228568 - 6229043
Alignment:
Q  95 ctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcgg 194  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  6228568 ctaaaataaactataaacagtaatatgtaaacataaaattaaagtagtaataagca-taagcatgaagttgaaattgcaaagtttgactaaaaaactcgg 6228666  T
Q  195 gtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactcttaattgggggaatttt 294  Q
    ||| |||||||           |||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||    
T  6228667 gtggatgctttaaaaaaattaattacatagtttactaatgctataaattatga-----------tttttttataatacaactcttaattgggggaatttt 6228755  T
Q  295 ttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactag-ccaagtataagcatgnnnnnnntcac 393  Q
                 |||||||| ||| |||||||||||||||||||||||||||  |||||||||| |||| || | ||||||| |||||       || |    
T  6228756 cagttgacaagataatataaacgaggtttgaaacccccaaaaattagaaggtcggtaaacctccgttaaccagtcaaagtatatgcatgaaaaaaatcgc 6228855  T
Q  394 atatgtcacttttggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataattttta--------atttttcaggt 485  Q
    ||||||||||||||||| | ||||||| |||||  ||||||         |||||||| ||||||||||||||||||||||        |||||||||||    
T  6228856 atatgtcacttttggaatcgccgaaaacctaaattgttgaaaaaatgtttaaaacctcacaaaatagtcctataatttttattttttttatttttcaggt 6228955  T
Q  486 gggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaagctgacttatg 574  Q
    || ||||||||||||||| |||| |||||||| |||||||| ||||||| ||||| |||||||||||||| ||||||||  ||||||||    
T  6228956 ggaccactaaaccaattaatggggatttgaatctgccgaaccctaaaatcgtagcaaaattgtttaaaat-tcgcaaagtagacttatg 6229043  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 18660257 - 18660199
Alignment:
Q  90 ggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataag 148  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||| || |||||||    
T  18660257 ggccactaaaataaactataaacaataatatgtaagtataaaattaaattagtaataag 18660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 26682912 - 26682977
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaag 372  Q
    ||||||||| ||| ||||||||||||| |||||||||||| | ||| |||||||||||||| ||||    
T  26682912 caatataaaggaggtttgaaacccccacaaattagaaggtatgtaatcctccgctaactagtcaag 26682977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 41700945 - 41700880
Alignment:
Q  307 caatataaaagagatttgaaacccc-caaaaattagaaggtctataaacctccgctaactagccaa 371  Q
    ||||||||  ||| ||||||||||| || |||||||||||||| |||||||||| |||| ||||||    
T  41700945 caatataagggaggtttgaaacccctcacaaattagaaggtctgtaaacctccgttaaccagccaa 41700880  T

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Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 81 - 382
Target Start/End: Original strand, 7441239 - 7441534
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  7441239 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtagtaataagcattacgcatgaagttgaaattgcaaagtttg 7441338  T
Q  181 actaaaaagctcgggtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactctta 280  Q
    ||| ||||||||||||  |||||||           |||||||||||||||||||||||||||||||                  |||||||||||||||    
T  7441339 actgaaaagctcgggtagatgctttaaaaaaataaattacatagtttactaatgctataaattatga----ttttttttttttttataatacaactctta 7441434  T
Q  281 attgggggaattttttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagca 380  Q
    |||||| |||||||            ||||||  |||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||||||||    
T  7441435 attgggagaattttcagttcacaggacaatat--aagagatttgaaacccccaaaaatcagaaggtttggaaacctccgctaaccagccaagtataagca 7441532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 444 - 564
Target Start/End: Original strand, 7441537 - 7441657
Alignment:
Q  444 aaaacctcgcaaaatagtcctataatttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaa 543  Q
    ||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||   ||||| || | || |||||||||||| |||| ||    
T  7441537 aaaacctcgcaaaatagtcctgtgatttttcatttttcaggtggaccactaaaccaattagtgcagatttggatctaccaaacactaaaattatagcaaa 7441636  T
Q  544 attgtttaaaatctcgcaaag 564  Q
    |||||||||||||| ||||||    
T  7441637 attgtttaaaatcttgcaaag 7441657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 425
Target Start/End: Complemental strand, 43466177 - 43465842
Alignment:
Q  88 tgggccgctaaaataaactataaacaataatatgtaaacataaaatt---aaagtactaataagcattaagcttgaagttgaaattgcaaagtttgacta 184  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||| |   |||||| |||||||  |||  | |||||||||| ||||||||||||||||    
T  43466177 tgggcagctaaaataaactataaccaataatatgtaaacataaaacttataaagtagtaataagtcttatacatgaagttgaatttgcaaagtttgacta 43466078  T
Q  185 aaaagctcgggtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactcttaattg 284  Q
    ||||  |||| || || ||||           |||||||||||| |||| |||||||||||||                  |||||||||||||||||||    
T  43466077 aaaaattcggatggatactttaaaaaaataaattacatagtttattaatactataaattatgaatatttttgtttt-----ataatacaactcttaattg 43465983  T
Q  285 ggggaattttttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnn 384  Q
    | ||||||||            |||||| |||||||||||||||||| ||||| |||||||| | |||||| | ||| || |||||| ||||||||||      
T  43465982 gaggaattttcatttgacaagacaatatcaaagagatttgaaaccccaaaaaaatagaaggtatgtaaacccctgctgaccagccaaatataagcatgaa 43465883  T
Q  385 nnnnntcacatatgtcacttttggaaccaccgaaaatctaa 425  Q
         ||||||||||||||||||||||| ||||||| ||||    
T  43465882 aaaagtcacatatgtcacttttggaaccgccgaaaaactaa 43465842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 307 - 560
Target Start/End: Complemental strand, 25807299 - 25807037
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcactttt 406  Q
    |||| |||| |||||||||||| || |||||||| ||||| | ||||||||||||| | | |||| ||||||||||       |||||||||||||||||    
T  25807299 caatgtaaatgagatttgaaacaccaaaaaattaaaaggtatgtaaacctccgctacccaaccaaatataagcatgacaaaaatcacatatgtcactttt 25807200  T
Q  407 ggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataa---------tttttaatttttcaggtgggccactaaac 497  Q
     ||||| ||||||| | ||||  |||||         |||| |||| ||||||| |||||||         || ||||||||  || ||||||||||  |    
T  25807199 agaaccgccgaaaacccaaaccattgaaaaattgtttaaaaactcgtaaaatagacctataattataaattttcttaattttctagatgggccactacgc 25807100  T
Q  498 caattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgc 560  Q
    ||||||||||||||||  ||| | | ||||||| ||||||| | |||||||||||||||||||    
T  25807099 caattagtgggaatttagataagtcaaacactacaattgtaacaaaattgtttaaaatctcgc 25807037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 463 - 563
Target Start/End: Complemental strand, 30587674 - 30587574
Alignment:
Q  463 ctataatttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaa 562  Q
    |||| ||||||||||||||   |||||||||| |||| || | ||||||||| || ||||||| |||||||| || || |||||||||||||||||||||    
T  30587674 ctatgatttttaatttttcgtatgggccactacaccattttgcgggaatttggatttgccgaaaactaaaatcgtcgcgaaattgtttaaaatctcgcaa 30587575  T
Q  563 a 563  Q
    |    
T  30587574 a 30587574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 469 - 535
Target Start/End: Complemental strand, 43465792 - 43465726
Alignment:
Q  469 tttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaatt 535  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||| || |||| ||||||||||||    
T  43465792 tttttaatttttcaggtggaccattaaaccaattagtgcgaatttggatctgccaaacactaaaatt 43465726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 3650641 - 3650590
Alignment:
Q  321 tttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaag 372  Q
    ||||||||||||| |||||||||||| | ||||||||||||||| |||||||    
T  3650641 tttgaaacccccagaaattagaaggtttgtaaacctccgctaaccagccaag 3650590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 13833944 - 13833911
Alignment:
Q  160 aagttgaaattgcaaagtttgactaaaaagctcg 193  Q
    |||||||||||||||||||||| |||||||||||    
T  13833944 aagttgaaattgcaaagtttgattaaaaagctcg 13833911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 25911647 - 25911688
Alignment:
Q  522 cgaacactaaaattgtagctaaattgtttaaaatctcgcaaa 563  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  25911647 cgaacactaaaattgtggtaaaattgtttaaaatctcgcaaa 25911688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 81 - 563
Target Start/End: Original strand, 17354276 - 17354765
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  17354276 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaatttaagtagtaataatcattaagcatgaagttgaaattgcaaagtttg 17354375  T
Q  181 actaaaaagctcgggtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactctta 280  Q
    | |||||| |  || || ||| |||           |||||||||||| ||||||||||||||||||                  |||||||||||||||    
T  17354376 aataaaaatcctggatggatgttttaaaaagataaattacatagtttaataatgctataaattatga----tgatttttttttttataatacaactctta 17354471  T
Q  281 attgggggaattttttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaact----agccaagtata 376  Q
    |||||| |||||||            |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||    |||||| ||||    
T  17354472 attgggagaattttcagttgacaagacaatataaaagagatttgaaacccccaaaaattagaaggtttgtaaacctcagctaactaaccagccaaatata 17354571  T
Q  377 agcatgnnnnnnntcacatatgtcacttttggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataa-------- 468  Q
    |||||        |||||||||||| |||| ||||| ||||||| |||||| ||||||          ||| |||||||||||||||||| |            
T  17354572 agcat-aaaaagatcacatatgtcaattttagaaccgccgaaaacctaaacagttgaaaaattgttt-aaatctcgcaaaatagtcctatgacttttaat 17354669  T
Q  469 -tttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaa 563  Q
     ||||||||||||||| ||  |||||||||||||| ||||   |||||||   ||||||||| |||||||||| ||||| ||||||||||| ||||    
T  17354670 ttttttaatttttcagatgaaccactaaaccaattggtggacgtttgaatcgaccgaacacttaaattgtagcaaaattttttaaaatctcccaaa 17354765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 95 - 564
Target Start/End: Original strand, 30908934 - 30909403
Alignment:
Q  95 ctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcgg 194  Q
    |||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||  ||||| ||||||||||||| ||||    
T  30908934 ctaaaacaagctataaacaataatatgtaaacataaaattagagtagtaataagcattaagcatgaagttgaaaccgcaaattttgactaaaaagttcgg 30909033  T
Q  195 gtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactcttaattgggggaatttt 294  Q
     |  |||||||           ||| |||||||||||||| ||||||||||||                  |||| ||||||||||||||||||||||||    
T  30909034 atagatgctttaaaaaaataaattatatagtttactaatgatataaattatga--------atatttttttataaaacaactcttaattgggggaatttt 30909125  T
Q  295 ttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagta--taagcatgnnnnnnntca 392  Q
                |||||| ||||||||| |||| ||| ||||| |||||||| | |||||||||||||||    ||||||   |||||||       | |    
T  30909126 catttgacaatacaatatcaaagagattcgaaa-cccaaaaaaatagaaggtatgtaaacctccgctaaccgttcaagtaataaagcatgaaaaaaataa 30909224  T
Q  393 catatgtcacttttggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataa--------tttttaatttttcagg 484  Q
    |||||||||||||||||||| |||||||||||||| ||||||         |||| |||||||||||| |||||||        ||||||||||| || |    
T  30909225 catatgtcacttttggaaccgccgaaaatctaaactgttgaaaaaatgtttaaaa-ctcgcaaaatagacctataaattttaactttttaattttacacg 30909323  T
Q  485 tgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaag 564  Q
    ||||| ||||||||||||| || ||||||| ||  ||||||||||||||| || || |||||||||||||||| ||||||    
T  30909324 tgggctactaaaccaattaatgcgaatttggatccgccgaacactaaaatcgtcgcaaaattgtttaaaatcttgcaaag 30909403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 42474170 - 42474100
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcat 151  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  42474170 gtttgcgtgggccgctaaaataaactacaaacaataacatgtaaacataaaattaaagtagtaataagcat 42474100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 11482731 - 11482806
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatg 382  Q
    ||||||||| ||||||||||| ||| |||||||||||||| | ||||||||||||| | |  ||||||||||||||    
T  11482731 caatataaaggagatttgaaaacccgaaaaattagaaggtatgtaaacctccgctaccaaaacaagtataagcatg 11482806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 42474057 - 42474015
Alignment:
Q  146 aagcattaagcttgaagttgaaattgcaaagtttgactaaaaa 188  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  42474057 aagcattaagcatgaagttgaaattgcaaagtttgactaaaaa 42474015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 555
Target Start/End: Complemental strand, 42473727 - 42473647
Alignment:
Q  475 atttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaat 555  Q
    ||||| || |||| |||||| ||||||||||| | ||||| | ||||||||||||||||| ||| |  |||||||||||||    
T  42473727 attttccatgtggaccactataccaattagtgaggatttggacatgccgaacactaaaatcgtaacagaattgtttaaaat 42473647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 1748313 - 1748247
Alignment:
Q  316 agagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatg 382  Q
    ||||||||||||| |   ||||||||||||||||||| |||| ||||||   |||||||||||||||    
T  1748313 agagatttgaaactcgttaaaattagaaggtctataatcctctgctaaccgaccaagtataagcatg 1748247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 12882446 - 12882605
Alignment:
Q  88 tgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaa 187  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||    
T  12882446 tgggccgccaaattaaactataaacaataatatgtaaacataaaattaaagtagtaataagcattaagcatgaagttgaaattgcaaaatttgactaaaa 12882545  T
Q  188 agctcgggtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatga 247  Q
    || ||||||  |||||||           ||||| | |||||||||||||||||||||||    
T  12882546 agttcgggttgatgctttaaaaaattaaattacacaatttactaatgctataaattatga 12882605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 15083678 - 15083775
Alignment:
Q  90 ggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaa 187  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||  |||||||||| |||||||||||||||||||    
T  15083678 ggccactaaaataaactataaacaataatatgtaagcataaaattaaagtggtaataagcattaagtatgaagttgaagttgcaaagtttgactaaaa 15083775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 563
Target Start/End: Original strand, 12882659 - 12882926
Alignment:
Q  308 aatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnn-tcacatatgtcactttt 406  Q
    ||||||||||| |||||||||||| ||||||||||||||||  ||| || ||||||| | |||||||||||||||        |||||||||||||||||    
T  12882659 aatataaaagatatttgaaaccccaaaaaattagaaggtcttgaaagcttcgctaaccaaccaagtataagcatgaaaaataatcacatatgtcactttt 12882758  T
Q  407 ggaaccaccgaaaatctaaa---cggttgaannnnnnnnnaaaacctcgcaaaatagtcctataa--------tttttaatttttcaggtgggccactaa 495  Q
     ||||| ||||||| |||||   | ||||||         ||||||||||||||||||||||| |        ||||||||||||||| |||| |||||     
T  12882759 agaaccgccgaaaacctaaaatactgttgaaaaattgtttaaaacctcgcaaaatagtcctatgaattttaattttttaatttttcagatgggtcactac 12882858  T
Q  496 accaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaa 563  Q
    ||||||||||||| ||||  || ||| |||||||||| | ||||| |||||||||||||| |||||||    
T  12882859 accaattagtggggatttagatctgcagaacactaaattcgtagcaaaattgtttaaaatttcgcaaa 12882926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 18114007 - 18113927
Alignment:
Q  87 gtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaa 168  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||    
T  18114007 gtgggccgctaaaataaactataaacaataatttgtaa-cataaaattaaagtagtaataagcattaagcatgaagttgaaa 18113927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 444 - 559
Target Start/End: Complemental strand, 18113693 - 18113578
Alignment:
Q  444 aaaacctcgcaaaatagtcctataatttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaa 543  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||| ||||| ||||||||||||  ||||| |  | || || || ||||| ||||  ||    
T  18113693 aaaacctcgcaaaatagacctatgatttttaatttttgaggtgggtcactacaccaattagtggtgatttggacctaccaaataccaaaatcgtagtaaa 18113594  T
Q  544 attgtttaaaatctcg 559  Q
    ||||||||||||||||    
T  18113593 attgtttaaaatctcg 18113578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 15083951 - 15084047
Alignment:
Q  467 aatttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaa 563  Q
    ||||||||||||||||||||| |||||| |||||||||||   ||||| ||  || |||||||||||||| | | ||||||||||||||||| ||||    
T  15083951 aatttttaatttttcaggtggaccactacaccaattagtgatgatttggatcggcggaacactaaaattgcaacaaaattgtttaaaatctcacaaa 15084047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 15842165 - 15842106
Alignment:
Q  454 aaaatagtcctataatttttaatttttcaggtgggccactaaaccaattagtgggaattt 513  Q
    ||||||| ||||||||||||||||||| || |||||||||| ||||||||||||| ||||    
T  15842165 aaaatagacctataatttttaattttttagatgggccactacaccaattagtggggattt 15842106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 27324721 - 27324629
Alignment:
Q  467 aatttttaatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcg 559  Q
    |||||| ||||||  || |||||||||| |||||||||||| |||||  ||||| ||||||||||||  | | | ||||||||||||||||||    
T  27324721 aattttcaattttctagatgggccactataccaattagtggaaatttagatatgtcgaacactaaaaccgcaacaaaattgtttaaaatctcg 27324629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 18113838 - 18113771
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataa 377  Q
    ||||||||| |||||||||||||||| ||||||   |||| | |||||||| |||||| ||||||||||||    
T  18113838 caatataaatgagatttgaaaccccccaaaatt---aggtttgtaaacctcagctaaccagccaagtataa 18113771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 45807356 - 45807291
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaag 372  Q
    |||| ||| |||| ||||||||||||| |||||||||||| | |||  |||||||||| |||||||    
T  45807356 caatgtaagagaggtttgaaacccccacaaattagaaggtttgtaagtctccgctaaccagccaag 45807291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 4998696 - 4998572
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttg 180  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||    
T  4998696 gtttggatgggccgcaaaaataaactataaacaataatacgtaaacataaaattaaaatagtaataagcattaagcatgaagttgaaattgcaaagtttg 4998597  T
Q  181 actaaaaagctcgggtgaatgcttt 205  Q
    |||||||| ||| |||  |||||||    
T  4998596 actaaaaaactcaggtagatgcttt 4998572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 308 - 563
Target Start/End: Complemental strand, 25090306 - 25090053
Alignment:
Q  308 aatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcacttttg 407  Q
    |||||||| ||||||||||||||| ||||||||||| |||| || |||||| ||| | | |||||||||||||||       ||||||  |||||||||     
T  25090306 aatataaaggagatttgaaaccccaaaaaattagaatgtctgtagacctccactacccaaccaagtataagcatgacgaaaatcacat--gtcactttta 25090209  T
Q  408 gaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataatttttaatttttcaggtgggccactaaaccaattagtgg 507  Q
     ||||  |||||||| |||| ||||||         |||| |||| ||||||  ||||| ||||||||||||  ||||||||||||| ||||||||||||    
T  25090208 aaaccgtcgaaaatccaaaccgttgaaaaatggtttaaaaactcgtaaaataaacctatgatttttaattttctaggtgggccactacaccaattagtgg 25090109  T
Q  508 gaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgcaaa 563  Q
      ||||  ||||| |||| |||||||  | ||| |||||||||| | |||||||||    
T  25090108 agatttagatatgtcgaatactaaaacagcagcaaaattgtttatattctcgcaaa 25090053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 4998479 - 4998409
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataa 377  Q
    |||||||||| |||||||||||||| |||||||||||||||  ||||||||||||||| || |||||||||    
T  4998479 caatataaaaaagatttgaaaccccgaaaaattagaaggtcggtaaacctccgctaaccagtcaagtataa 4998409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 434
Target Start/End: Complemental strand, 19706217 - 19706091
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcactttt 406  Q
    |||||| |||||||||||||||||| ||||| || ||||| | ||||||||| ||||| | ||||||||||| |||       | |||||||||| ||||    
T  19706217 caatatcaaagagatttgaaaccccaaaaaaatataaggtatgtaaacctccactaaccaaccaagtataagaatg-aaaaaataacatatgtcattttt 19706119  T
Q  407 ggaaccaccgaaaatctaaacggttgaa 434  Q
    ||||||  |||||| |||||| ||||||    
T  19706118 ggaaccgtcgaaaacctaaactgttgaa 19706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 434
Target Start/End: Complemental strand, 19706330 - 19706232
Alignment:
Q  333 aaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcacttttggaaccaccgaaaatctaaacggttg 432  Q
    ||||| |||||||| | |||||||||| |||| ||||| |||||||||||       ||||||  ||||||||||||||| |||||||||||||| ||||    
T  19706330 aaaaaatagaaggtatgtaaacctccgataaccagcca-gtataagcatgaaaaaaatcacat--gtcacttttggaaccgccgaaaatctaaactgttg 19706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 94 - 434
Target Start/End: Complemental strand, 43226595 - 43226266
Alignment:
Q  94 gctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcg 193  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||     
T  43226595 gctaaaataaactataaacgataatatataaacataaaattaaagtagtaaaaagcattaagcatgaagttg-aattgcaaagtttgactaaaaagttca 43226497  T
Q  194 ggtgaatgctttnnnnnnnnnnnttacatagtttactaatgctataaattatgannnnnnnnnnnnnnnnnnataatacaactcttaattgggggaattt 293  Q
     |||||||||||           |||||||||||||||||||||||||||||||                  |||||||||||||||||| || ||| ||    
T  43226496 tgtgaatgctttaaaaaaattaattacatagtttactaatgctataaattatga---------tttttttttataatacaactcttaatt-ggagaaatt 43226407  T
Q  294 tttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcac 393  Q
    || |         |||||||||||||||||||||||||||||||| ||||||| | ||||||| | ||||| || ||| ||||||||||       ||||    
T  43226406 ttcaattgatagacaatataaaagagatttgaaacccccaaaaatcagaaggtttgtaaaccttcactaaccagtcaaatataagcatgaaaaaaatcac 43226307  T
Q  394 atatgtcacttttggaaccaccgaaaatctaaacggttgaa 434  Q
    ||||||||||||| ||| |   |||||||||||| ||||||    
T  43226306 atatgtcacttttagaatcgttgaaaatctaaaccgttgaa 43226266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 9045748 - 9045815
Alignment:
Q  130 aaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcgggtg 197  Q
    ||||||||||  |||||| ||||||||  ||||||||||| || | |||||||||||||||| |||||    
T  9045748 aaattaaagttgtaataaacattaagcaagaagttgaaatggcgatgtttgactaaaaagctagggtg 9045815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 9045941 - 9045984
Alignment:
Q  335 aaattagaaggtctataaacctccgctaactagccaagtataag 378  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  9045941 aaattcgaaggtctataaacctccgctaacatgccaagtataag 9045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 15632460 - 15632399
Alignment:
Q  321 tttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatg 382  Q
    |||||||||||   |||||||||| ||| ||||||| ||| |||| ||||||||||||||||    
T  15632460 tttgaaacccctgcaaattagaagatctgtaaaccttcgcaaacttgccaagtataagcatg 15632399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 364
Target Start/End: Original strand, 50376103 - 50376160
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaac 364  Q
    ||||||||  ||| |||||||| |||| |||||||||||||| |||||||||| ||||    
T  50376103 caatataagggaggtttgaaactcccacaaattagaaggtctttaaacctccgttaac 50376160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 307 - 560
Target Start/End: Complemental strand, 10653 - 10389
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagta-taagcat--gnnnnnnntcacatatgtcact 403  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||| || ||||||  ||||||  |       |||||| ||||| |    
T  10653 caatataaaagagatttgaaatccccaaaaattagaaggtttgtaaacctccactaaccagtcaagtacaaagcatgagaaaaaaatcacatgtgtcagt 10554  T
Q  404 tttggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagtcctataattttt--------aatttttcaggtgggccactaa 495  Q
    |||| |||| ||||||| |||||| ||||||         |||||||| |||| ||| ||||| ||||||        |||||| |||||||||||  ||    
T  10553 tttgaaaccgccgaaaacctaaactgttgaaaaattgtttaaaacctcccaaattagacctatgatttttaaaatttaaattttccaggtgggccaggaa 10454  T
Q  496 accaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaaatctcgc 560  Q
    ||||||||||||| ||||| || ||||||||||||||||  || | ||||||| |||||||||||    
T  10453 accaattagtggggatttggatctgccgaacactaaaatcataacaaaattgtgtaaaatctcgc 10389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 266 - 557
Target Start/End: Complemental strand, 36190 - 35887
Alignment:
Q  266 ataatacaactcttaattgggggaattttttacnnnnnnnncaatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaact 365  Q
    ||||||||||||||||||||| |||||||  |         ||||||||||||||||||||||||||||| |||||||||| | ||||||||| |||||     
T  36190 ataatacaactcttaattgggagaattttcaattgacaagacaatataaaagagatttgaaacccccaaagattagaaggtttgtaaacctccactaacc 36091  T
Q  366 agccaagtat-aagcatg---nnnnnnntcacatatgtcacttttggaaccaccgaaaatctaaacggttgaannnnnnnnnaaaacctcgcaaaatagt 461  Q
    || ||||||| |||||||          |||||||||||||||||| |||  || |||| |||||| ||||||         |||||||| ||||||||     
T  36090 agtcaagtataaagcatgaaaaaaaaaatcacatatgtcacttttgaaactgccaaaaacctaaactgttgaaaaattgtttaaaacctcccaaaataga 35991  T
Q  462 cctataattttt--------aatttttcaggtgggccactaaaccaattagtgggaatttgaatatgccgaacactaaaattgtagctaaattgtttaaa 553  Q
    ||||| ||||||        |||||| |||||||||||  ||||||||||||||| ||||| |  || ||||||||||||| ||| | ||||||| ||||    
T  35990 cctatgatttttaaaatttaaattttccaggtgggccaagaaaccaattagtggggatttggaactggcgaacactaaaatcgtatcaaaattgtgtaaa 35891  T
Q  554 atct 557  Q
    ||||    
T  35890 atct 35887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 10768 - 10668
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttg 180  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||      ||  |||||||||||||||||    
T  10768 gtttgggagggccactaaaataaactataaacaataatatttaaacataaaattaaagtagtaatcagcatta------aacatgaaattgcaaagtttg 10675  T
Q  181 actaaaa 187  Q
    |||||||    
T  10674 actaaaa 10668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: scaffold2061
Description:

Target: scaffold2061; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 607 - 501
Alignment:
Q  81 gtttgggtgggccgctaaaataaactataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttg 180  Q
    ||||||||||| | |||||| ||  ||| ||||||||||| ||||||||||| ||||||  |||||||| | |||| ||||||||||||||||||||||     
T  607 gtttgggtgggtcactaaaacaacttattaacaataatatctaaacataaaactaaagtggtaataagcctaaagcatgaagttgaaattgcaaagttta 508  T
Q  181 actaaaa 187  Q
    |||||||    
T  507 actaaaa 501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 307 - 434
Target Start/End: Complemental strand, 201 - 75
Alignment:
Q  307 caatataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcactttt 406  Q
    |||||| || ||||||||||||||| ||||| || |||||   ||||||||| ||||| ||||||||||||| |||       |||||||||||||||||    
T  201 caatatcaacgagatttgaaaccccaaaaaaatataaggtacgtaaacctccactaaccagccaagtataagaatg-aaaaaatcacatatgtcactttt 103  T
Q  407 ggaaccaccgaaaatctaaacggttgaa 434  Q
    | ||||| |||||| |||||| ||||||    
T  102 gaaaccatcgaaaacctaaactgttgaa 75  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 260 - 216
Alignment:
Q  390 tcacatatgtcacttttggaaccaccgaaaatctaaacggttgaa 434  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||    
T  260 tcacatatgtcacttttggaaccgccgaaaacctaaactgttgaa 216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 434
Target Start/End: Original strand, 1213 - 1337
Alignment:
Q  310 tataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcacttttgga 409  Q
    |||||| ||||||||||||||| | ||||||||| || |  | || ||||||| | | |||||||||||||||       ||||||||||||||||| ||    
T  1213 tataaaggagatttgaaaccccaataaattagaaagtatgcagacatccgctacccaaccaagtataagcatgataaatatcacatatgtcacttttaga 1312  T
Q  410 accaccgaaaatctaaacggttgaa 434  Q
    || |||||||| |||||| ||||||    
T  1313 acaaccgaaaacctaaaccgttgaa 1337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 33431 - 33519
Alignment:
Q  107 ataaacaataatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaaattgcaaagtttgactaaaaagctcggg 195  Q
    |||||| ||||||| | ||||||||||||||||  |||||||||||||||   |||||||| |  |  |||||||||||||||||||||    
T  33431 ataaactataatatattaacataaaattaaagttgtaataagcattaagcacaaagttgaagtgtcggagtttgactaaaaagctcggg 33519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 310 - 434
Target Start/End: Complemental strand, 891 - 767
Alignment:
Q  310 tataaaagagatttgaaacccccaaaaattagaaggtctataaacctccgctaactagccaagtataagcatgnnnnnnntcacatatgtcacttttgga 409  Q
    |||||| ||||||||||||||| | |||||| || || | ||||| ||||||| | | | || ||||||||||       ||||||||||||||||| ||    
T  891 tataaaggagatttgaaaccccaataaattataaagtatgtaaacatccgctacccaacgaaatataagcatgataaaaatcacatatgtcacttttaga 792  T
Q  410 accaccgaaaatctaaacggttgaa 434  Q
    || |||||||| |||||| ||||||    
T  791 acaaccgaaaacctaaactgttgaa 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 8037911 - 8037860
Alignment:
Q  116 aatatgtaaacataaaattaaagtactaataagcattaagcttgaagttgaa 167  Q
    |||||||||||| |||||||||||  ||||||||||||| | ||||||||||    
T  8037911 aatatgtaaacacaaaattaaagttgtaataagcattaatcatgaagttgaa 8037860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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