View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809-Insertion-6 (Length: 373)
Name: NF0809-Insertion-6
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 32528397 - 32528504
Alignment:
| Q |
7 |
aaaaagatccctataatctaattttaaacaaacaacgtcgttgtaacttaaactaa-taaaggaatatatatgaataagatccactcaccatgctatata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528397 |
aaaaagatccctataatctaattttaaacaaacaacgtcgttgtaacttaaaataaataaaggaatatatatgaataagatccactcaccatgctatata |
32528496 |
T |
|
| Q |
106 |
aacaacag |
113 |
Q |
| |
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|||||||| |
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| T |
32528497 |
aacaacag |
32528504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 32528584 - 32528729
Alignment:
| Q |
196 |
gtcaattatgaaataattccaaaggattaaagcaatcaaagtggtttagaatatcagaacttgtgatagcgatttcaatctg--tgnnnnnnnnnnnngt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |
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| T |
32528584 |
gtcaattatgaaataattccaaaggattaaagcaatcaaagcggtttagaatatcagaacttgtgatagcgatttcaatctgttttttttttttttttgt |
32528683 |
T |
|
| Q |
294 |
ttagaaaaatactttttcaaacattacgacaaaatactgtaacaaa |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32528684 |
ttagaaaaatactttttcaaacattacgacaaaatactgtaacaaa |
32528729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 32534634 - 32534711
Alignment:
| Q |
197 |
tcaattatgaaataattccaaaggattaaagcaatcaaagtggtttagaatatcagaacttgtgatagcgatttcaat |
274 |
Q |
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|
||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||||||||| ||||||||| |
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| T |
32534634 |
tcaattatgaaataactccaaaggattaaagtaatcaaagtggattagaaaatcaggacttgtgatagagatttcaat |
32534711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 32534486 - 32534527
Alignment:
| Q |
7 |
aaaaagatccctataatctaattttaaacaaacaacgtcgtt |
48 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
32534486 |
aaaaagatccatataatctaattttaaacaaataacgtcgtt |
32534527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 32534720 - 32534767
Alignment:
| Q |
292 |
gtttagaaaaatactttttcaaacattacgacaaaatactgtaacaaa |
339 |
Q |
| |
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|||||| |||||| |||||||||| ||||||||||||| ||||||||| |
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| T |
32534720 |
gtttaggaaaatattttttcaaactttacgacaaaatattgtaacaaa |
32534767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 32534540 - 32534585
Alignment:
| Q |
32 |
aaacaaacaacgtcgttgtaacttaaactaataaaggaatatatat |
77 |
Q |
| |
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||||||||||||||||||||| ||||| |||||| |||||||||| |
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|
| T |
32534540 |
aaacaaacaacgtcgttgtaatttaaataaataaatgaatatatat |
32534585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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