View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809-Insertion-7 (Length: 337)
Name: NF0809-Insertion-7
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-7 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 7669676 - 7670015
Alignment:
| Q |
7 |
aaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggcaaaagctacaagtgcgcggcgag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
7669676 |
aaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggcacaagctacaagtgcgcggagag |
7669775 |
T |
|
| Q |
107 |
atggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattgactctgaa---------gatgatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7669776 |
atggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattgactctgaagatgatgatgatgatg |
7669875 |
T |
|
| Q |
198 |
atgataatgatggtgttgttggtgctgatagtgatattggtgatgaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctac |
297 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7669876 |
atgatgatgatggtgttgttggtgctgatagtgatattggtgaggaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctac |
7669975 |
T |
|
| Q |
298 |
atctcttctatacatgttgccaattccctctttcatctcc |
337 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7669976 |
atctcttatatacatgttgccaattccctctttcatctcc |
7670015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 7089850 - 7090197
Alignment:
| Q |
7 |
aaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggcaaaagctacaagtgcgcggcgag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7089850 |
aaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcacggcgag |
7089949 |
T |
|
| Q |
107 |
atggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattgactc--tgaagatgatgatgat-- |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
7089950 |
atggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattgactctgtgatgatgatgatgatga |
7090049 |
T |
|
| Q |
203 |
-------------aatgatggtgttgttggtgctgatagtgatattggtgatgaacattctggtgctatgtgagattttccatgtctatgtgtatgtttg |
289 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
7090050 |
tgatgatgacagcgatgatggtgttgttggtactgatagtgatattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgctta |
7090149 |
T |
|
| Q |
290 |
gtttctacatctcttctatacatgttgccaattccctctttcatctcc |
337 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7090150 |
gtttctacacctcttctatacatgttgccaattccctctttcatctcc |
7090197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4589 times since January 2019
Visitors: 5751