View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809-Insertion-9 (Length: 251)
Name: NF0809-Insertion-9
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 35720292 - 35720052
Alignment:
| Q |
7 |
aattataactatttctaaagtaacaagcatgaataattatgatttatcaacggtataannnnnnnnacagatacaattaattaaaattaatctcataaac |
106 |
Q |
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| T |
35720292 |
aattataactatttctaaagtaacaagcatgaataattatgatttatcaacggtataattttttttacagatacaattaattaaaattaatctcataaac |
35720193 |
T |
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| Q |
107 |
ttacttggatcaagctcagcactgactaactccaaaataaaatgtttgttaccaacaataccagtgacaatattcttgatgaggccaccatcactttcct |
206 |
Q |
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| T |
35720192 |
ttacttggatcaagctcagcactgactaactccaaaattaaatgtttgttaccaacaataccagtgacaatattcttgatgaggccaccatcactttcct |
35720093 |
T |
|
| Q |
207 |
tcacactcactaaagcttttacattatgatgagatttggta |
247 |
Q |
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| T |
35720092 |
tcacactcactaaagcttttacattatgatgagatttggta |
35720052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 35729078 - 35729210
Alignment:
| Q |
103 |
aaacttacttggatcaagctcagcactgactaactccaaaataaaatgtttgttaccaacaataccagtgacaatattcttgatgaggccaccatcactt |
202 |
Q |
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|||||||||||||||||| |||||||| || | |||||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
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| T |
35729078 |
aaacttacttggatcaagttcagcactaacaagctccaaaaccaagtgtttgttaccaacaataccagtaacaatattctttatgagaccaccatcactt |
35729177 |
T |
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| Q |
203 |
tccttcacactcactaaagcttttacattatga |
235 |
Q |
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| T |
35729178 |
tgcttcaacgtcactaaagctttcacattatga |
35729210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 28051263 - 28051130
Alignment:
| Q |
102 |
taaacttacttggatcaagctcagcactgactaactccaaaataaaatgtttgttaccaacaataccagtgacaatattcttgatgaggccaccatcact |
201 |
Q |
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||||||||||||||||||| |||||||| || | |||||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
28051263 |
taaacttacttggatcaagttcagcactaaccagctccaaaactaagtgtttgttaccaacaataccagtaacaatattctttatgagaccaccatcact |
28051164 |
T |
|
| Q |
202 |
ttccttcacactcactaaagcttttacattatga |
235 |
Q |
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| T |
28051163 |
ttgcttcaacgtcactaaagctttcacattatga |
28051130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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