View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_10 (Length: 679)
Name: NF0809_high_10
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 112 - 667
Target Start/End: Original strand, 38124497 - 38125041
Alignment:
| Q |
112 |
gggctttgtcaccagggaggtcagagttttcgagccccacgaaggcaaaacgagttgaaaaactactcaattttggttttgatttcttcaagagtaaaaa |
211 |
Q |
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| T |
38124497 |
gggctttgtcaccagggaggtcagagttttcgagccccacgaaggcaaaacgagttgaaaaactactcaattttggttttgatttcttcaagagtaaaaa |
38124596 |
T |
|
| Q |
212 |
atctgttggccttaattcaccgtcgaatggttttggaaataatgaagacgttcataagcttcgtttgcttgataaccgtttgattcagtggcgatatgca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124597 |
atctgttggccttaattcaccgtcgaatggttttggaaacaatgaagacgttcataagcttcgtttgcttgataaccgtttgattcagtggcgatatgca |
38124696 |
T |
|
| Q |
312 |
aacgctagagcacaaattgtgaatgcaaacatttctcgccacaccaaggtacacttgtttgtctcacatatttaataaacttttatcgaataagcatttc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38124697 |
aacgctagagcacaaattgtgaatgcaaacatttctcgccacaccgaggtacacttgtttgtctcacatatttaatgaacttttatcgaataagcatttc |
38124796 |
T |
|
| Q |
412 |
tgtaagttgtttacataagttgtccggaacacttgttgaaataaacggaaactaggttactaagatgtcatggcattaactatttttataaccttgttaa |
511 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38124797 |
tgtaagttgtttgcataagttgtccggaacacttgttgaaataaactgaaactaggttactaagatgtcatgtcattaactatttttataaccttgttaa |
38124896 |
T |
|
| Q |
512 |
aacaaagtttatgctataagacaagataagtggtaaataagctaattctaaatgcattatgtctcctttctttatgtgatctttatagctaatgagaaat |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38124897 |
aacaaagtttatgctataagacaagataagtggtaaataagctaattctaaatgcattatgtctcctt-----------tctttatagctaatgagaaat |
38124985 |
T |
|
| Q |
612 |
tgaattaacattatcttggtttatgaatgtttttagagcaatttgatatgtgtctg |
667 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124986 |
tgaattaacattatcttggtttatgaatgtttttagagcaatttgatatgtgtctg |
38125041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 35916575 - 35916472
Alignment:
| Q |
7 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916575 |
cctctttctttgtatgtgcatctttcgaaacaacatcaatccctttgtgggaaacagctcaacttccacttccagaagactgcatcacggaacatgcaac |
35916476 |
T |
|
| Q |
107 |
agct |
110 |
Q |
| |
|
|||| |
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|
| T |
35916475 |
agct |
35916472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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