View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_100 (Length: 323)
Name: NF0809_high_100
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_100 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 39039964 - 39039649
Alignment:
| Q |
1 |
caaacatttgtaatgtagaataatatattcacttgaaatataaattaaagagttataaagtatgattgaattttatttgtaattatgtcgttcaaccaaa |
100 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39039964 |
caaacatttgtaatgtagaacaatatattcacttgaaatatgaattaaagagttataaagtatgattgaattttttttgtaattatgtcgttcaaccaaa |
39039865 |
T |
|
| Q |
101 |
caatttatt-gtgtccttaaacttttaaattattggtaattaggttcttcaattgaaggaccaaaattaaatttattctaatgaatttaacgtcggactc |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39039864 |
caatttatttgtgtccttaaacttttaaattattggtaattaggttcttcaattgaaggaccaaaattaaatttattctaatgaatttaacgtcagactc |
39039765 |
T |
|
| Q |
200 |
gaagaaacagtcgtctctaatgaagacgatgaagaaaataaaccaatagatctcaaggccaagnnnnnnnggtcatgagaccgataccatacatatactt |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39039764 |
gaagaaacggtcgtctctaatgaagacgacgaagaaaataaaccaatagatctcaaggccaag--aaaaaggtcatgagaccgataccatacatatactt |
39039667 |
T |
|
| Q |
300 |
catcctcatattgttgga |
317 |
Q |
| |
|
|||||| || |||||||| |
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|
| T |
39039666 |
catccttattttgttgga |
39039649 |
T |
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