View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_high_11 (Length: 662)
Name: NF0809_high_11
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 6e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 50439451 - 50439162
Alignment:
| Q |
28 |
caagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtct-------------tat |
114 |
Q |
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| T |
50439451 |
caagtttaatgtagatgaagctcatagaaaaatgaatggcttttcagcttgtggagatttgcttagagactaccaatgtagtcttatacagggtttctat |
50439352 |
T |
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| Q |
115 |
tgtaatcttgctcgc-aaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcgcaatcttcaccttg-------------- |
199 |
Q |
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| T |
50439351 |
tgtaatcttgctcgcaaaccattctcagtgtgctgagatgtaaagtttagttcatgccatgtgtattgctcacaatcttcaccttgatcatgtcgttttt |
50439252 |
T |
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| Q |
200 |
-----agattctaccctaattgcaactgtttttaatcaatcaacctcaatctcttatctcaaatctctcttgaaagatgttcttaatgtc |
284 |
Q |
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| T |
50439251 |
tagacagattctactctaattgcaactgtttttaatcaatcagcctcaatctcttatctcaaatttctcttgaaagatgttcttaatgtc |
50439162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 469 - 632
Target Start/End: Complemental strand, 50438920 - 50438757
Alignment:
| Q |
469 |
tatccctcttaatattattnnnnnnngagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
568 |
Q |
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| T |
50438920 |
tatccctcttaatattattaaaaaaatagagaaggaatatgagtgcttgatttaacgaataaagttacatgcactaatttgtacaccatatgctaatttc |
50438821 |
T |
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| Q |
569 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
632 |
Q |
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| T |
50438820 |
gtgttctagatttacggaaagaaaactttgcactaaattacacatcgagcctcaaagatacttg |
50438757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 293 - 479
Target Start/End: Complemental strand, 50439112 - 50438940
Alignment:
| Q |
293 |
ctattcctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttttcttcccggtttttattaatt |
392 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50439112 |
ctatttctacgcagacttattagctaaaaacaaattttcttcttcttacaattgcttaaaaaaggatttcatggttttt--------------attaatt |
50439027 |
T |
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| Q |
393 |
caaaatgtatttttcttcaagctatttcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
479 |
Q |
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| T |
50439026 |
caaaatgtatttttcttcaagctatctcggtgttggattgtaagggtgttcccaccaccggtttagttgatcaacttatccctctta |
50438940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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